Deatailed information for gene ENSG00000199962

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  • Basic information
  • CohesinDB ID: CDBG00018357
  • Gene Symbol: Y_RNA
  • Ensembl ID: ENSG00000199962
  • Gene locus: chr21:17576797-17576906 Strand: +
  • Gene type: misc_RNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = -0.0265 FDR = 0.0006
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): -0.000
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: IMR-90,MCF-10A,H1-Mesenchymal,H1-Mesendoderm,Olfactory,MCF-7,SARS-Cov2-olfactory,GM12878,K-562,A-549,HFFc6,HeLa-S3,H1-Trophectoderm,H9-hESC,Liver,OCI-AML-3,HCT-116,Hep-G2,H1-hESC,HCC1599,Motor-Neuron,BMEC,HUVEC,RT-112,CyT49-endoderm,HFF-hTERT,HAP1
  • Related loop: chr21:15875000-15900000~~chr21:17575000-17600000, chr21:16925000-16950000~~chr21:17550000-17575000, chr21:16925000-16950000~~chr21:17575000-17600000, chr21:17050000-17075000~~chr21:17550000-17575000, chr21:17100000-17125000~~chr21:17550000-17575000, chr21:17375000-17400000~~chr21:17550000-17575000, chr21:17375000-17400000~~chr21:17575000-17600000, chr21:17400000-17425000~~chr21:17550000-17575000, chr21:17400000-17425000~~chr21:17575000-17600000, chr21:17425000-17450000~~chr21:17550000-17575000, chr21:17550000-17575000~~chr21:17650000-17675000, chr21:17575000-17600000~~chr21:17800000-17825000,
  • Cohesin-loop type: HiChIP,HiC,Direct
  • Cohesin-loop study: 4DNFIQWD8ZYD, 4DNFI8649RQJ, 4DNFI3CFMRID, ENCSR662QKG, GSE95015, 4DNFIWZEN3FF, ENCSR194SRI, GSE43070, GSE94872, 4DNFIDJ2JZ7Q, 4DNFIMROE6N4, 4DNFIE8E4ANZ, ENCSR499RVD, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, ENCSR794RDS, GSE108787, GSE120294, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIW8TIFI5, ENCSR866FWQ, 4DNFI6EIFUZI, 4DNFIBM714BP, 4DNFIA6NSSBJ, 4DNFIF2D3TL9, 4DNFI9VXTBE2, 4DNFIREVU1Z5, 4DNFIYD8LO9Z, 4DNFIRKGMZRQ, GSE111537, 4DNFIHN2QSMX, GSE155380, 4DNFIV239W4L, 4DNFICEGAHRC, 4DNFIOUSETUP, 4DNFIE8T8JZ8, 4DNFI9YAVTI1, 4DNFIBT4EAKN, GSE52457, 4DNFIM2BMJ33, Direct, 4DNFIXWCLD4M, 4DNFIH9U4I7I, 4DNFIAS8LV1C, 4DNFISPUVQHA, 4DNFI6JJQKFJ, 4DNFIX7H3CE2, 4DNFIYDBBSE3, GSE101921, 4DNFIK61ILGM, 4DNFIYIAUEPW, 4DNFIEJEFCAM, ENCSR244BBG, GSE108869, GSE116872, ENCSR393LOP, 4DNFIOCW5AEM, 4DNFIPAF4PYT, 4DNFIQVMVRP6, 4DNFI7XAZNNQ, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIFLJLIS5, 4DNFINEQY95T, 4DNFIDBIEXI7, 4DNFIZGCA8AH, ENCSR094EIC, GSE105028, 4DNFIBKZK63V, ENCSR507AHE, GSE58752, 4DNFII84FBKM
  • Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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