Deatailed information for gene ENSG00000200754

Check detailed explainations here

  • Basic information
  • CohesinDB ID: CDBG00018706
  • Gene Symbol: Y_RNA
  • Ensembl ID: ENSG00000200754
  • Gene locus: chr21:17527139-17527247 Strand: -
  • Gene type: misc_RNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = -0.0087 FDR = 0.2693
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): -0.000
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: HEK293T,H1-hESC,A-549,HFFc6,H9-hESC
  • Related loop: chr21:16925000-16950000~~chr21:17525000-17550000, chr21:17375000-17400000~~chr21:17500000-17525000, chr21:17400000-17425000~~chr21:17500000-17525000, chr21:17500000-17525000~~chr21:27500000-27525000, chr21:17511653-17514907~~chr21:17526487-17528802,
  • Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
  • Cohesin-loop study: GSE44267, ENCSR662QKG, Direct, GSE105028, 4DNFI5SUHCGZ, 4DNFIJWBWE41, ENCSR587DSF
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
eachgene