Browse_each

Basic information

CohesinDB ID: CDBG00022969

Gene Symbol: VDAC2P1

Ensembl ID: ENSG00000214976

Gene locus: chr21:16094414-16095372 Strand: -

Gene type: processed_pseudogene

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1129 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.957
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MCF-10A,MB157,Keratinocytes192627,Olfactory,SARS-Cov2-olfactory,GM12878,A-549,HFFc6,HeLa-S3,H9-hESC,REC-1,Hep-G2,H1-hESC,HCC1599,Motor-Neuron,HUVEC,CyT49-endoderm,CC-2551,HFF-hTERT,HAP1

Cohesin-loop type: HiChIP,HiC,Direct

Cohesin-loop study: 4DNFIQWD8ZYD, ENCSR662QKG, GSE95015, ENCSR194SRI, GSE116875, GSE94872, 4DNFIMROE6N4, ENCSR499RVD, ENCSR794RDS, GSE116869, 4DNFI5SUHCGZ, ENCSR852KQC, GSE120294, 4DNFIZ4F74QR, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIEYQ5ZIR, 4DNFI6EIFUZI, 4DNFIF2D3TL9, 4DNFIA6NSSBJ, 4DNFIREVU1Z5, 4DNFII6AN691, 4DNFIYD8LO9Z, 4DNFIRKGMZRQ, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFICEGAHRC, 4DNFIIMZB6Y9, 4DNFIL9M97T2, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFIBT4EAKN, 4DNFI3A3VYWU, Direct, 4DNFISPUVQHA, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, 4DNFIYDBBSE3, GSE101921, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR228TUX, GSE116872, 4DNFI8JFOAJT, ENCSR393LOP, 4DNFIC3HAU11, ENCSR305RTT, 4DNFI2J1ODWB, 4DNFIFLJLIS5, GSE105028, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIH7TH4MF, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000214976