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Basic information

CohesinDB ID: CDBG00030295

Gene Symbol: CHODL-AS1

Ensembl ID: ENSG00000231755

Gene locus: chr21:17835015-17885608 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0467 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.959
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,H1-hESC,A-549,HFF-hTERT,HUVEC

Related loop: chr21:17375000-17400000~~chr21:17825000-17850000, chr21:17450000-17475000~~chr21:17825000-17850000, chr21:17675000-17700000~~chr21:17850000-17875000, chr21:17675000-17700000~~chr21:17875000-17900000, chr21:17825000-17850000~~chr21:18000000-18025000, chr21:17825000-17850000~~chr21:18225000-18250000, chr21:17850000-17875000~~chr21:18200000-18225000, chr21:17850000-17875000~~chr21:18225000-18250000, chr21:17875000-17900000~~chr21:18200000-18225000,

Cohesin-loop type: HiC,Direct

Cohesin-loop study: 4DNFIE8T8JZ8, ENCSR393LOP, 4DNFI8649RQJ, ENCSR662QKG, 4DNFI6XD6JAQ, Direct, GSE94872, ENCSR499RVD, ENCSR852KQC, 4DNFIH7TH4MF, ENCSR244BBG

Cohesin-loop subunit: Other

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000231755