Deatailed information for gene ENSG00000232560
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00030832
- Gene Symbol: LINC01549
- Ensembl ID: ENSG00000232560
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Gene locus: chr21:17438820-17450104
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = -0.0968
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.945
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: IMR-90,H1-hESC,HFF-hTERT,HAP1,HFFc6
- Related loop:
chr21:16550000-16575000~~chr21:17450000-17475000,
chr21:17425000-17450000~~chr21:17550000-17575000,
chr21:17425000-17450000~~chr21:17775000-17800000,
chr21:17425000-17450000~~chr21:39075000-39100000,
chr21:17450000-17475000~~chr21:17825000-17850000,
chr21:17450000-17475000~~chr21:26925000-26950000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFI3A3VYWU, Direct, 4DNFIB7QTIMH, 4DNFI5SUHCGZ, ENCSR852KQC, 4DNFIH7TH4MF
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .