Deatailed information for gene ENSG00000237735
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00034366
- Gene Symbol: AF130359.1
- Ensembl ID: ENSG00000237735
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Gene locus: chr21:16754518-16815688
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0423
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.929
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: RT-112,HFF-hTERT,HAP1,HFFc6,HeLa-S3,H9-hESC,H1-Mesenchymal
- Related loop:
chr21:14875000-14900000~~chr21:16775000-16800000,
chr21:16050000-16075000~~chr21:16750000-16775000,
chr21:16075000-16100000~~chr21:16775000-16800000,
chr21:16175000-16200000~~chr21:16750000-16775000,
chr21:16375000-16400000~~chr21:16800000-16825000,
chr21:16650000-16675000~~chr21:16750000-16775000,
chr21:16725000-16750000~~chr21:17125000-17150000,
chr21:16800000-16825000~~chr21:17250000-17275000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
4DNFI1E6NJQJ, 4DNFI8649RQJ, GSE52457, Direct, 4DNFIMROE6N4, 4DNFIE8E4ANZ, GSE105028, GSE155380
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .