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Basic information

CohesinDB ID: CDBG00050363

Gene Symbol: AP001172.2

Ensembl ID: ENSG00000270139

Gene locus: chr21:16417138-16419080 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0478 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,Liver,H1-hESC,HFF-hTERT,PAEC,HeLa-S3,H9-hESC,H1-Mesenchymal,Hepatocyte-H9

Cohesin-loop type: HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI8649RQJ, GSE52457, 4DNFIQVMVRP6, 4DNFIWZEN3FF, 4DNFIM2BMJ33, 4DNFIVJ3IIQL, Direct, 4DNFIFI6NIKJ, ENCSR668RDP, 4DNFIE8E4ANZ, ENCSR381DCY, 4DNFICEGAHRC, GSE105028, GSE108787, GSE58752, 4DNFIZF1KI43, 4DNFI7H4II2V

Cohesin-loop subunit: Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000270139