Deatailed information for gene ENSG00000280594
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00056265
- Gene Symbol: BTG3-AS1
- Ensembl ID: ENSG00000280594
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Gene locus: chr21:17611743-17633199
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.4416
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.505
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: HCT-116,GM12878,Hep-G2,MSLCL,HAP1,HFFc6
- Related loop:
chr21:14075000-14100000~~chr21:17600000-17625000,
chr21:14375000-14400000~~chr21:17600000-17625000,
chr21:15000000-15025000~~chr21:17600000-17625000,
chr21:15600000-15625000~~chr21:17600000-17625000,
chr21:15725000-15750000~~chr21:17600000-17625000,
chr21:16550000-16575000~~chr21:17600000-17625000,
chr21:17597892-17599183~~chr21:17611016-17612344,
chr21:17600000-17625000~~chr21:17800000-17825000,
chr21:17600000-17625000~~chr21:17900000-17925000,
chr21:17600000-17625000~~chr21:25725000-25750000,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI3A3VYWU, GSE95015, 4DNFI9ZWZ5BS, ENCSR194SRI, Direct, 4DNFIMROE6N4, 4DNFIYD8LO9Z, 4DNFIV56OFE3, 4DNFI1UEG1HD, 4DNFI5SUHCGZ, 4DNFICSTCJQZ, ENCSR452NHL, ENCSR410MDC
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .