Deatailed information for cohesin site CDBP00413471
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- Basic information
- CohesinDB ID: CDBP00413471
- Locus: chr21-15309753-15310082
- Data sourse: ENCSR230ZWH, ENCSR917QNE
- Cell type: Liver
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
- Hi-C loops: False Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 88%,
"7_Enh": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: PGR, CHD8, FOXA1, HLF, RELA, MYC, RAD21, GRHL3, HIF1A, RXRA, SMARCE1, PIAS1, ESR1, OCA2, CTCF, SP1, HNF4A, GATA2, NOTCH3, BRD4, NFIL3, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
- Related loop: chr21:15300000-15325000~~chr21:15400000-15425000,
Tools:
- Assay
