- Basic information
- CohesinDB ID: CDBP00415374
- Locus: chr21-26008836-26009076
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Data sourse: GSE116344
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Cell type: RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 55%,
"15_Quies": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PAX7, NANOG, PGR, FOXA2, NKX2-2, CEBPA, PAF1, XBP1, ZBTB17, FOXA1, ZBTB33, HOXB13, ERG, YY1, NEUROD1, ATF3, ONECUT1, MYC, SMARCA4, ETS1, GATA4, RAD21, ZBTB44, PBX4, GRHL3, ARNT, RXRA, OTX2, ATF4, NKX2-1, PROX1, GABPA, MAX, MAFB, NKX3-1, CEBPG, CEBPB, NR2F2, CREB1, PIAS1, SCRT2, ETV1, MYOD1, PHOX2B, CTCF, RBM22, ELF3, SP1, BRD2, SPI1, BCL11A, AR, PAX3-FOXO1, IRF1, GATA6, GATA2, POU2F3, FLI1, JUND, BRD4, SCRT1, ZNF528, MRTFB, PDX1
- Target gene symbol (double-evidenced CRMs): APP,MRPL39
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 1
- Related genes and loops