- Basic information
- CohesinDB ID: CDBP00415389
- Locus: chr21-26057470-26057741
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Data sourse: GSE206145, GSE116344, ENCSR917QNE
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Cell type: Liver, RH4, HEK293T
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 59%,
"15_Quies": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, XBP1, PATZ1, FOXA1, ZNF90, NFIC, ZNF362, ZBTB44, ZNF189, SFPQ, ZNF629, TEAD1, TRIM28, ZNF121, ESR1, TP73, CTCF, ZNF577, TCF12, GATA6, PDX1, TFAP2C, GLIS1, ZNF263, POU5F1, ZSCAN21, ZBTB48, HOXC5, USP7, MYC, SMARCA4, STAT3, XRCC5, NFE2, NR2F6, ZNF639, VDR, NR3C1, ESRRA, GRHL2, FEZF1, TRPS1, SPI1, GATA2, SIX2, ZNF766, ZIM3, RUNX1, CEBPA, LDB1, SIN3A, ZFX, SMAD3, ZNF770, ERG3, PRDM10, ZBTB2, ZNF384, RUNX2, GATA4, OSR2, ARNT, PBX3, MAFB, MED1, TEAD3, ZXDB, ZNF22, RBM22, HNF4A, PHIP, PRDM6, ZNF34, ZNF394, FOXA2, EBF1, PAF1, ZNF692, GTF2B, KDM1A, YY1, RELA, ZIC2, OTX2, GATA3, TAL1, MAX, ZNF449, GATA1, AGO2, BCL11B, SP7, GFI1B, NR2F2, MYOD1, BRD2, ZNF843, ELF3, AR, ZBTB42, ZNF366, BRD4, AHR
- Target gene symbol (double-evidenced CRMs): APP,CYYR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 16
- Number of somatic mutations (non-coding): 2
- Related genes and loops