- Basic information
- CohesinDB ID: CDBP00415403
- Locus: chr21-26091586-26092080
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Data sourse: ENCSR000BLD, ENCSR000BTQ, ENCSR000BTU, ENCSR167MTG, GSE131606, GSE72082, GSE206145-GSE177045, GSE138405, GSE110061, GSE116344, GSE129526, ENCSR000BLY, GSE25021, GSE105028, ENCSR000ECE, ENCSR000EDE, ENCSR703TNG, GSE126990, GSE108869, GSE97394
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Cell type: MCF-7, H1-hESC, Hela-Kyoto, HCT-116, RH4, Hep-G2, Ishikawa, HeLa-S3, HUES64, SK-N-SH, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 7% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 66%,
"15_Quies": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CEBPA, POU5F1, PAF1, AFF4, CTBP1, ZNF317, GTF2B, SMAD3, XBP1, TEAD4, SRF, YY1, RELA, RUNX2, RAD21, PRDM1, ARNT, ZBTB44, TAL1, ZNF143, FOS, ARNTL, NR3C1, CEBPB, TEAD3, TEAD1, KMT2A, SCRT2, CREB1, ESR1, GRHL2, JUN, RBM22, ELF3, SPI1, CTCF, ZNF664, GATA2, YAP1, FLI1, ZNF605, BRD4, SCRT1, PHIP, SMC3, BRCA1, STAG1
- Target gene symbol (double-evidenced CRMs): MRPL39,APP
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops