- Basic information
- CohesinDB ID: CDBP00415410
- Locus: chr21-26106493-26107129
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Data sourse: ENCSR000BLD, GSE101921
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Cell type: H1-hESC, HCAEC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 50%,
"7_Enh": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, SOX2, XBP1, FOXA1, ZNF362, CHD7, TP63, KLF5, TRIM28, KLF6, SNAI2, ESR1, OCA2, TP73, MLL, CTCF, JUN, TCF12, EP300, KLF1, SMC1, TEAD4, TFAP2C, NANOG, CHD8, POU2F2, POU5F1, MYCN, ERG, PBX1, MYC, SMARCA4, RAD21, GRHL3, RXRA, STAT3, VDR, ESRRA, CEBPB, CREB1, EZH2, IRF1, GATA2, FLI1, CTNNB1, MAFG, LDB1, ZFX, PRDM10, ZNF384, RUNX2, ARNT, ATF2, FOS, ZEB1, SCRT2, KLF9, RBM22, BCL11A, TFAP2A, REST, POU2F3, ASH2L, ZNF548, PHIP, TCF3, PPARG, FOXA2, PAF1, HOXB13, RELA, JUNB, HIF1A, GATA3, TAL1, MAX, NRIP1, ZNF143, GATA1, KLF4, CEBPG, AR, EGLN2, HSF1, NOTCH3, BRD4, SCRT1, CLOCK, MAZ, ZNF440, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): APP
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 24
- Number of somatic mutations (non-coding): 0
- Related genes and loops