- Basic information
- CohesinDB ID: CDBP00415412
- Locus: chr21-26120863-26121114
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Data sourse: ENCSR000BLD, GSE111913
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Cell type: RT-112, H1-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 52%,
"15_Quies": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GLIS1, NANOG, CEBPA, POU5F1, PAF1, XBP1, DUX4, FOXA1, YY1, JUNB, MYC, CHD7, ARNT, GRHL3, GATA3, STAT3, MAX, TP63, FOS, RCOR1, NFE2, MITF, MED1, NR3C1, CEBPB, KLF4, ZNF750, KMT2A, TP53, TP73, ZNF334, TBX5, NFKB1, USF2, JUN, RBM22, TCF12, EP300, USF1, AR, PAX3-FOXO1, ZNF257, POU2F3, E2F4, BRD4, E2F1, TEAD4
- Target gene symbol (double-evidenced CRMs): APP
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops