- Basic information
- CohesinDB ID: CDBP00415450
- Locus: chr21-26212276-26212630
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Data sourse: GSE86191, GSE206145-NatGen2015, GSE67783, GSE68388
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Cell type: Fibroblast, HCT-116, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES,Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 82%,
"14_ReprPCWk": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, CHD8, BCL6, POU5F1, TOP2A, ZFX, XBP1, DDX5, ZNF823, ERG, ONECUT1, RAD21, TCF4, HIF1A, GRHL3, PRDM9, HAND2, KLF4, TEAD1, SCRT2, SNAI2, EZH2, TP53, CTCF, SPI1, BCL11A, SCRT1, MAZ, TEAD4
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops