- Basic information
- CohesinDB ID: CDBP00415481
- Locus: chr21-26377212-26377465
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Data sourse: GSE68388
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Cell type: HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 92%,
"7_Enh": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, SMC1A, ZNF316, FOXA2, POU5F1, SS18, DUX4, SMAD3, MAFF, BAHD1, HOXC5, JUNB, AHR, SMARCA4, DAXX, PBX4, GRHL3, NKX2-1, PRDM9, TAL1, STAT3, MAX, SOX10, ZNF143, FOS, TP63, KLF4, ZNF750, ZFP69B, TEAD1, ZNF573, NFE2L2, TP53, OCA2, ZNF334, NFKB1, ELF3, CTCF, JUN, MAFK, ZNF786, IRF4, FLI1, BRD4, TFAP2C, FOSL2
- Target gene symbol (double-evidenced CRMs): APP,MRPL39,GABPA,CYYR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops
- Related gene:
ENSG00000154719,
ENSG00000154727,
ENSG00000142192,
ENSG00000166265,
- Related loop:
chr21:25575000-25600000~~chr21:26375000-26400000,
chr21:25600000-25625000~~chr21:26375000-26400000,
chr21:25775000-25800000~~chr21:26375000-26400000,
chr21:25875000-25900000~~chr21:26375000-26400000,
chr21:25950000-25975000~~chr21:26375000-26400000,
chr21:26050000-26075000~~chr21:26375000-26400000,
chr21:26150000-26175000~~chr21:26375000-26400000,
chr21:26175000-26200000~~chr21:26375000-26400000,
chr21:26200000-26225000~~chr21:26375000-26400000,
chr21:26250000-26275000~~chr21:26350000-26375000,
chr21:26250000-26275000~~chr21:26375000-26400000,
chr21:26375000-26400000~~chr21:26525000-26550000,
chr21:26375000-26400000~~chr21:26650000-26675000,
chr21:26375000-26400000~~chr21:26675000-26700000,
chr21:26375000-26400000~~chr21:26700000-26725000,
chr21:26375000-26400000~~chr21:26800000-26825000,