- Basic information
- CohesinDB ID: CDBP00415482
- Locus: chr21-26385630-26386225
-
Data sourse: GSE103477, GSE206145-NatGen2015, GSE206145
-
Cell type: RPE, Fibroblast, THP-1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SA1,Rad21,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 79%,
"7_Enh": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, SKI, FOSL1, CEBPA, ZFX, SMAD3, FOXA1, MLLT3, MEF2C, CDK9, KDM1A, ERG, RELA, HOXC5, LYL1, JUNB, MYC, RAD21, PBX4, GATA3, BATF3, STAT3, MAX, FOS, GFI1, CDK8, RCOR1, NFE2, MED1, VDR, NR3C1, CEBPB, JMJD1C, ESRRA, TEAD1, TRIM28, MYB, KMT2A, TCF7L2, ZNF680, KDM5B, LMO2, ESR1, MLL, GRHL2, SETDB1, STAT5A, JUN, TCF12, SPI1, EP300, EHF, TRIM24, FLI1, BRD4, KMT2B, MLLT1
- Target gene symbol (double-evidenced CRMs): CYYR1,MRPL39,GABPA,APP
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
ENSG00000154719,
ENSG00000154727,
ENSG00000142192,
ENSG00000166265,
- Related loop:
chr21:25575000-25600000~~chr21:26375000-26400000,
chr21:25600000-25625000~~chr21:26375000-26400000,
chr21:25775000-25800000~~chr21:26375000-26400000,
chr21:25875000-25900000~~chr21:26375000-26400000,
chr21:25950000-25975000~~chr21:26375000-26400000,
chr21:26050000-26075000~~chr21:26375000-26400000,
chr21:26150000-26175000~~chr21:26375000-26400000,
chr21:26175000-26200000~~chr21:26375000-26400000,
chr21:26200000-26225000~~chr21:26375000-26400000,
chr21:26250000-26275000~~chr21:26375000-26400000,
chr21:26375000-26400000~~chr21:26525000-26550000,
chr21:26375000-26400000~~chr21:26650000-26675000,
chr21:26375000-26400000~~chr21:26675000-26700000,
chr21:26375000-26400000~~chr21:26700000-26725000,
chr21:26375000-26400000~~chr21:26800000-26825000,
chr21:26388393-26391116~~chr21:26404699-26406873,