- Basic information
- CohesinDB ID: CDBP00415490
- Locus: chr21-26437290-26438175
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Data sourse: ENCSR000BLD, GSE116344, GSE83726, GSE206145
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Cell type: RPE, H1-hESC, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 77%,
"7_Enh": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, POU2F2, CHD8, BCL6, CEBPA, POU5F1, NANOG, SOX2, ZFX, XBP1, SRF, HOXB13, YY1, RELA, RUNX2, MYC, RAD21, CHD7, TCF4, GRHL3, ARNT, HIF1A, BHLHE22, ATF2, PRDM9, XRCC5, ZNF143, CDK8, MITF, MED1, ARNTL, NR3C1, TRIM28, MYB, EZH2, TP53, MLL, ESR1, OCA2, GRHL2, MYOD1, CTCF, TCF12, SPI1, AR, TRIM24, ATF7, FLI1, NOTCH3, BRD4, JUND, TCF3, CLOCK, MRTFB, MYF5
- Target gene symbol (double-evidenced CRMs): APP,CYYR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops