- Basic information
- CohesinDB ID: CDBP00415498
- Locus: chr21-26469516-26470634
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Data sourse: GSE206145, GSE101921, GSE206145-NatGen2015, GSE68388, GSE103477
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Cell type: MDM, RPE, HMEC, Fibroblast, THP-1, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 68%,
"5_TxWk": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX2, TRIM28, NEUROG2, SOX2, PRDM1, ARNT, XBP1, BRD4, STAT3, PHOX2B, GATA1
- Target gene symbol (double-evidenced CRMs): CYYR1,GABPA
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 0
- Related genes and loops