- Basic information
- CohesinDB ID: CDBP00415501
- Locus: chr21-26491759-26492502
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Data sourse: GSE116344
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Cell type: RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 74%,
"7_Enh": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, CHD8, SMARCA2, POU2F2, MYCN, NKX2-2, SOX2, ZFX, DUX4, FOXA1, SRF, HOXB13, SMARCC1, YY1, RELA, NFIC, RUNX2, SMARCA4, CHD7, RAD21, PBX4, HIF1A, GRHL3, NKX2-1, FOXM1, MAX, TP63, NR3C1, CEBPB, TEAD1, ESR1, OCA2, ZNF334, TCF12, EP300, AR, SIX2, FLI1, NOTCH3, BRD4, MRTFB, TEAD4
- Target gene symbol (double-evidenced CRMs): CYYR1,MRPL39
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 18
- Number of somatic mutations (non-coding): 0
- Related genes and loops