Welcome to CohesinDB (v1.0.10), a comprehensive database for decoding cohesin-related epigenomes, 3D genomes and transcriptomes in human cells. Cohesin is a multifunctional protein complex for transcriptional regulation and chromatin organization. By integrating multiomics NGS datasets, CohesinDB provides search and browse functions for: Cohesin-binding sites, Cohesin-mediated loops and Cohesin-regulated CRMs/genes. CohesinDB also have functions including Analyze, Visulize, Data, Statistic, Download and Document. CohesinDB is a valuable resource for cohesin, epigenomes, transcriptional regulation and chromatin organization. Please cite our NAR paper.
Studies
Samples
Cell types
Social Media
NEWS
CohesinDB is published in NAR.
Sept. 27, 2022, 10:14 a.m.
We are thrilled to share our publication of CohesinDB in NAR: https://doi.org/10.1093/nar/gkac795 .
V1.0.10 update
Aug. 26, 2022, 10:30 a.m.
- Fix bugs in analyze and visualize page. - Add reminders about JavaScript and recommended browser. - Add functions to download visualizations.
V1.0.9 update
Aug. 7, 2022, 5:55 p.m.
Fixed know bugs and improved tutorial pages.
V1.0.8 update
July 15, 2022, 7:53 p.m.
Add cell type information in cohesin-CRMs. Now users can specify cell types when using "Analyze" page
V1.0.7 update
June 27, 2022, 6:57 p.m.
Include more function (Contact, Pipeline, Submit) in the "About" dropdown list.
V1.0.6 update
June 17, 2022, 4:13 p.m.
Fix known bugs. Improved documents.
V1.0.5 update
April 26, 2022, 2:44 p.m.
Revised description and tutotial for CohesinDB.
V1.0.4 update
April 18, 2022, 2:44 p.m.
Fix know bugs; Include more annotation for cohesin objects; Add the buttion to export table to csv/xlxs; Add script and mantainance page https://cohesindb.iqb.u-tokyo.ac.jp/pipeline/.
V1.0.3 update
Feb. 9, 2022, 6:16 p.m.
Changed the analyze3 to loop discovery. Fix bugs.
V1.0.2 update
Jan. 25, 2022, 4:16 p.m.
The database was updated to V1.0.2: fix bugs; include tissue specificity of each genes; Documents page.
Description page for each object.
Jan. 16, 2022, 6:38 p.m.
Now, you can check the detailed page for each cohesin site, loop and gene.
Cohesin-mediated interactions
Jan. 5, 2022, 2:22 p.m.
Now the "Browse" section includes new part: "Cohesin-mediated interactions"
CohesinDB released
Dec. 23, 2021, 5:23 p.m.
Now CohesinDB is open to the world~
Release on IQB
Dec. 20, 2021, 10:25 a.m.
The prototype of CohesinDB now can be accessed in IQB.
Download Page
Sept. 3, 2021, 2:53 p.m.
Download page is now released.
Analyze Page Added
Sept. 3, 2021, 2:52 p.m.
I am happy to release 3 types of analysis related to cohesin.
Browse page complete
Aug. 20, 2021, 4:24 p.m.
Now we provide two subsection for browse and search peaks or genes.
Visualization function
July 22, 2021, 2:27 p.m.
Now all data in this database can be visualized.
News example
June 21, 2021, 10:46 a.m.
something new
Build the data browser site
June 16, 2021, 3:44 p.m.
Now you can browser, filter, and search cohesin datasets.
Homepage data overview added
June 8, 2021, 6:40 p.m.
Now you can check the number of studies, samples and cell types from homepage
Add access map
June 3, 2021, 2:21 p.m.
Now you can check the visitors all around the world!
Add social media
June 3, 2021, 12:36 p.m.
Now you can check the social media from the University of Tokyo
Add the News part
June 2, 2021, 12:09 p.m.
Now the websites is updated with a 'News' section
Start the Project
June 1, 2021, 11:01 a.m.
Start the Project