CohesinDB logo

Welcome to CohesinDB (v1.0.10), a comprehensive database for decoding cohesin-related epigenomes, 3D genomes and transcriptomes in human cells. Cohesin is a multifunctional protein complex for transcriptional regulation and chromatin organization. By integrating multiomics NGS datasets, CohesinDB provides search and browse functions for: Cohesin-binding sites, Cohesin-mediated loops and Cohesin-regulated CRMs/genes. CohesinDB also have functions including Analyze, Visulize, Data, Statistic, Download and Document. CohesinDB is a valuable resource for cohesin, epigenomes, transcriptional regulation and chromatin organization. Please cite our NAR paper.

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Cell types


Social Media


CohesinDB is published in NAR.

Sept. 27, 2022, 10:14 a.m.

We are thrilled to share our publication of CohesinDB in NAR: .

V1.0.10 update

Aug. 26, 2022, 10:30 a.m.

- Fix bugs in analyze and visualize page. - Add reminders about JavaScript and recommended browser. - Add functions to download visualizations.

V1.0.9 update

Aug. 7, 2022, 5:55 p.m.

Fixed know bugs and improved tutorial pages.

V1.0.8 update

July 15, 2022, 7:53 p.m.

Add cell type information in cohesin-CRMs. Now users can specify cell types when using "Analyze" page

V1.0.7 update

June 27, 2022, 6:57 p.m.

Include more function (Contact, Pipeline, Submit) in the "About" dropdown list.

V1.0.6 update

June 17, 2022, 4:13 p.m.

Fix known bugs. Improved documents.

V1.0.5 update

April 26, 2022, 2:44 p.m.

Revised description and tutotial for CohesinDB.

V1.0.4 update

April 18, 2022, 2:44 p.m.

Fix know bugs; Include more annotation for cohesin objects; Add the buttion to export table to csv/xlxs; Add script and mantainance page

V1.0.3 update

Feb. 9, 2022, 6:16 p.m.

Changed the analyze3 to loop discovery. Fix bugs.

V1.0.2 update

Jan. 25, 2022, 4:16 p.m.

The database was updated to V1.0.2: fix bugs; include tissue specificity of each genes; Documents page.

Description page for each object.

Jan. 16, 2022, 6:38 p.m.

Now, you can check the detailed page for each cohesin site, loop and gene.

Cohesin-mediated interactions

Jan. 5, 2022, 2:22 p.m.

Now the "Browse" section includes new part: "Cohesin-mediated interactions"

CohesinDB released

Dec. 23, 2021, 5:23 p.m.

Now CohesinDB is open to the world~

Release on IQB

Dec. 20, 2021, 10:25 a.m.

The prototype of CohesinDB now can be accessed in IQB.

Download Page

Sept. 3, 2021, 2:53 p.m.

Download page is now released.

Analyze Page Added

Sept. 3, 2021, 2:52 p.m.

I am happy to release 3 types of analysis related to cohesin.

Browse page complete

Aug. 20, 2021, 4:24 p.m.

Now we provide two subsection for browse and search peaks or genes.

Visualization function

July 22, 2021, 2:27 p.m.

Now all data in this database can be visualized.

News example

June 21, 2021, 10:46 a.m.

something new

Build the data browser site

June 16, 2021, 3:44 p.m.

Now you can browser, filter, and search cohesin datasets.

Homepage data overview added

June 8, 2021, 6:40 p.m.

Now you can check the number of studies, samples and cell types from homepage

Add access map

June 3, 2021, 2:21 p.m.

Now you can check the visitors all around the world!

Add social media

June 3, 2021, 12:36 p.m.

Now you can check the social media from the University of Tokyo

Add the News part

June 2, 2021, 12:09 p.m.

Now the websites is updated with a 'News' section

Start the Project

June 1, 2021, 11:01 a.m.

Start the Project