Welcome to CohesinDB (v1.0.10), a comprehensive database for decoding cohesin-related epigenomes, 3D genomes and transcriptomes in human cells. Cohesin is a multifunctional protein complex for transcriptional regulation and chromatin organization. By integrating multiomics NGS datasets, CohesinDB provides search and browse functions for: Cohesin-binding sites, Cohesin-mediated loops and Cohesin-regulated CRMs/genes. CohesinDB also have functions including Analyze, Visulize, Data, Statistic, Download and Document. CohesinDB is a valuable resource for cohesin, epigenomes, transcriptional regulation and chromatin organization. Please cite our NAR paper.
Sept. 27, 2022, 10:14 a.m.
We are thrilled to share our publication of CohesinDB in NAR: https://doi.org/10.1093/nar/gkac795 .
Aug. 26, 2022, 10:30 a.m.
Aug. 7, 2022, 5:55 p.m.
Fixed know bugs and improved tutorial pages.
July 15, 2022, 7:53 p.m.
Add cell type information in cohesin-CRMs. Now users can specify cell types when using "Analyze" page
June 27, 2022, 6:57 p.m.
Include more function (Contact, Pipeline, Submit) in the "About" dropdown list.
June 17, 2022, 4:13 p.m.
Fix known bugs. Improved documents.
April 26, 2022, 2:44 p.m.
Revised description and tutotial for CohesinDB.
April 18, 2022, 2:44 p.m.
Fix know bugs; Include more annotation for cohesin objects; Add the buttion to export table to csv/xlxs; Add script and mantainance page https://cohesindb.iqb.u-tokyo.ac.jp/pipeline/.
Feb. 9, 2022, 6:16 p.m.
Changed the analyze3 to loop discovery. Fix bugs.
Jan. 25, 2022, 4:16 p.m.
The database was updated to V1.0.2: fix bugs; include tissue specificity of each genes; Documents page.
Jan. 16, 2022, 6:38 p.m.
Now, you can check the detailed page for each cohesin site, loop and gene.
Jan. 5, 2022, 2:22 p.m.
Now the "Browse" section includes new part: "Cohesin-mediated interactions"
Dec. 23, 2021, 5:23 p.m.
Now CohesinDB is open to the world~
Dec. 20, 2021, 10:25 a.m.
The prototype of CohesinDB now can be accessed in IQB.
Sept. 3, 2021, 2:53 p.m.
Download page is now released.
Sept. 3, 2021, 2:52 p.m.
I am happy to release 3 types of analysis related to cohesin.
Aug. 20, 2021, 4:24 p.m.
Now we provide two subsection for browse and search peaks or genes.
July 22, 2021, 2:27 p.m.
Now all data in this database can be visualized.
June 21, 2021, 10:46 a.m.
June 16, 2021, 3:44 p.m.
Now you can browser, filter, and search cohesin datasets.
June 8, 2021, 6:40 p.m.
Now you can check the number of studies, samples and cell types from homepage
June 3, 2021, 2:21 p.m.
Now you can check the visitors all around the world!
June 3, 2021, 12:36 p.m.
Now you can check the social media from the University of Tokyo
June 2, 2021, 12:09 p.m.
Now the websites is updated with a 'News' section
June 1, 2021, 11:01 a.m.
Start the Project