Deatailed information for gene ENSG00000142149
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00008194
- Gene Symbol: HUNK
- Ensembl ID: ENSG00000142149
-
Gene locus: chr21:31873019-32004064
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs
- Regulatory cohesin (double-evidenced):
chr21-31194439-31202575,
chr21-31203109-31204027,
chr21-31212597-31212933,
chr21-31213155-31214950,
chr21-31215238-31215447,
chr21-31215856-31216097,
chr21-31216371-31217225,
chr21-31218747-31219814,
chr21-31220481-31221467,
chr21-31222011-31222540,
chr21-31373970-31375053,
chr21-31380139-31380510,
chr21-31381978-31382484,
chr21-31382914-31383204,
chr21-31385756-31388309,
chr21-31390976-31391592,
chr21-31392260-31393213,
chr21-31394630-31394826,
chr21-31395133-31395525,
chr21-31396580-31397002,
chr21-31397471-31398996,
chr21-31399268-31399467,
chr21-31601897-31607562,
chr21-31608168-31608479,
chr21-31609099-31609509,
chr21-31610141-31611349,
chr21-31612718-31614026,
chr21-31619746-31619986,
chr21-31620281-31621249,
chr21-31621827-31622105,
chr21-31623474-31624174,
chr21-31624761-31625676,
chr21-31725854-31726651,
chr21-31727461-31727835,
chr21-31728911-31729266,
chr21-31729532-31733952,
chr21-31734532-31735896,
chr21-31737021-31738863,
chr21-31739215-31739559,
chr21-31744136-31744783,
chr21-31745048-31745345,
chr21-31749551-31751240,
chr21-31752382-31752744,
chr21-31753017-31753300,
chr21-31756290-31756665,
chr21-31757643-31758184,
chr21-31759524-31759803,
chr21-31761057-31761442,
chr21-31766028-31766595,
chr21-31769626-31770330,
chr21-31772220-31773460,
chr21-31774067-31774624,
chr21-31776710-31776859,
chr21-31778677-31779057,
chr21-31780386-31782267,
chr21-31783965-31788184,
chr21-31788928-31789494,
chr21-31795940-31796354,
chr21-31799656-31801067,
chr21-31801954-31802665,
chr21-31803322-31804210,
chr21-31806067-31806777,
chr21-31819548-31820334,
chr21-31843522-31843806,
chr21-31845092-31845578,
chr21-31846765-31846994,
chr21-31847336-31847670,
chr21-31851015-31851259,
chr21-31851947-31852172,
chr21-31855210-31855593,
chr21-31857356-31857673,
chr21-31862100-31862414,
chr21-31863205-31863716,
chr21-31864316-31868880,
chr21-31869101-31869249,
chr21-31870626-31876394,
chr21-31879191-31880604,
chr21-31880837-31881297,
chr21-31885133-31885977,
chr21-31886766-31887046,
chr21-31887520-31887771,
chr21-31888931-31889583,
chr21-31890447-31891698,
chr21-31892180-31893001,
chr21-31893897-31894160,
chr21-31894562-31896089,
chr21-31896945-31897865,
chr21-31899034-31899545,
chr21-31900153-31901712,
chr21-31904246-31907100,
chr21-31907679-31909915,
chr21-31910132-31910784,
chr21-31911007-31912130,
chr21-31912571-31914287,
chr21-31914577-31914927,
chr21-31915668-31917007,
chr21-31917222-31917806,
chr21-31918467-31918690,
chr21-31920394-31921579,
chr21-31922902-31923422,
chr21-31924662-31924944,
chr21-31927171-31929175,
chr21-31929569-31930018,
chr21-31931518-31932416,
chr21-31932637-31934436,
chr21-31938380-31938792,
chr21-31945430-31947699,
chr21-31948121-31948607,
chr21-31948883-31949325,
chr21-31949860-31950518,
chr21-31954932-31955194,
chr21-31968074-31968890,
chr21-31970770-31971371,
chr21-31973554-31973655,
chr21-31974576-31974810,
chr21-31977738-31978118,
chr21-31979137-31979420,
chr21-31980189-31981046,
chr21-31983009-31983792,
chr21-31985307-31986138,
chr21-31986414-31988047,
chr21-31988683-31989200,
chr21-31990202-31990791,
chr21-31991513-31992746,
chr21-31993758-31994696,
chr21-31996734-31997182,
chr21-31998160-31999689,
chr21-32001051-32001696,
chr21-32006901-32008003,
chr21-32049756-32050545,
chr21-32054761-32055126,
chr21-32056844-32057061,
chr21-32063486-32063554,
chr21-32065461-32066038,
chr21-32067081-32068048,
chr21-32070620-32071627,
chr21-32073717-32074345,
chr21-32075068-32075437,
chr21-32076251-32077638,
chr21-32080346-32080864,
chr21-32082220-32082966,
chr21-32083237-32083710,
chr21-32084044-32084525,
chr21-32088574-32088818,
chr21-32092232-32092466,
chr21-32093737-32094360,
chr21-32095485-32097938,
chr21-32098632-32099431,
chr21-32099703-32101172,
chr21-32150088-32150241,
chr21-32151150-32151762,
chr21-32155232-32155544,
chr21-32160236-32160384,
chr21-32163391-32163756,
chr21-32174893-32175123,
chr21-32184137-32185515,
chr21-32186564-32187673,
chr21-32189312-32189997,
chr21-32192204-32192679,
chr21-32198407-32198773,
chr21-32199517-32199817,
chr21-32224707-32226197,
chr21-32232980-32234166,
chr21-32236079-32236414,
chr21-32240295-32240566,
chr21-32241163-32242272,
chr21-32245181-32245400,
chr21-32245946-32246422,
chr21-32246714-32246907,
chr21-32247235-32248068,
chr21-32248296-32250173,
chr21-32250431-32250902,
chr21-32252193-32252346,
chr21-32252822-32254394,
chr21-32255209-32255948,
chr21-32256207-32261140,
chr21-32263244-32263640,
chr21-32264631-32265932,
chr21-32266164-32267358,
chr21-32276135-32276434,
chr21-32277427-32280137,
chr21-32283338-32283575,
chr21-32283821-32284221,
chr21-32284918-32285277,
chr21-32287224-32287305,
chr21-32294066-32294397,
chr21-32295053-32296161,
chr21-32298101-32299158,
chr21-32299751-32300868,
chr21-32377005-32377825,
chr21-32379033-32379799,
chr21-32381416-32385002,
chr21-32385478-32386069,
chr21-32386291-32386639,
chr21-32386870-32387447,
chr21-32388340-32390195,
chr21-32392163-32394318,
chr21-32394704-32394805,
chr21-32397459-32397677,
chr21-32574949-32576472,
chr21-32576694-32579657,
chr21-32580005-32580573,
chr21-32580904-32582331,
chr21-32583026-32584806,
chr21-32585090-32585613,
chr21-32586300-32587559,
chr21-32590405-32590668,
chr21-32590870-32591197,
chr21-32592176-32593983,
chr21-32594251-32594977,
chr21-32595506-32596052,
chr21-32596424-32597923,
chr21-32598775-32602954,
chr21-32603193-32603581,
chr21-32604431-32605130,
chr21-32610128-32610562,
chr21-32610963-32613801,
chr21-32614942-32615265,
chr21-32618034-32618378,
chr21-32618831-32619540,
chr21-32620088-32620453,
chr21-32621102-32621530,
chr21-32624498-32625154,
chr21-33700016-33700294,
chr21-33700936-33701037,
chr21-33701558-33702121,
chr21-33703645-33704316,
chr21-33704920-33705073,
chr21-33705365-33705686,
chr21-33706730-33707558,
chr21-33708388-33709548,
chr21-33711416-33711912,
chr21-33712966-33713558,
chr21-33713815-33714138,
chr21-33715952-33716503,
chr21-33717558-33717807,
chr21-33719132-33719441,
chr21-33723328-33723674,
-
Co-expression with cohesin genes Rho = 0.1087
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.505
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.911
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,MB157,DU145,Keratinocytes192627,K1,H1-Mesenchymal,Olfactory,Hepatocyte-H9,MCF-7,HEK293T,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,LNCaP,SU-DHL-2,H9-hESC,iPSC,REC-1,OCI-AML-3,Hep-G2,Kelly,H1-hESC,HCC1599,HT-1376,Motor-Neuron,MSLCL,HUES64,SU-DHL-4,CyT49-hESC,HUVEC,RT-112,CyT49-endoderm,Skin-Fibroblast,CyT49-Gut,CC-2551,HAP1,HFF-hTERT
- Related loop:
chr21:27500000-27525000~~chr21:32000000-32025000,
chr21:31200000-31225000~~chr21:31850000-31875000,
chr21:31375000-31400000~~chr21:31950000-31975000,
chr21:31600000-31625000~~chr21:31950000-31975000,
chr21:31622589-31624532~~chr21:31873410-31874559,
chr21:31725000-31750000~~chr21:31850000-31875000,
chr21:31725000-31750000~~chr21:31950000-31975000,
chr21:31750000-31775000~~chr21:31850000-31875000,
chr21:31750000-31775000~~chr21:31950000-31975000,
chr21:31775000-31800000~~chr21:31875000-31900000,
chr21:31775000-31800000~~chr21:31950000-31975000,
chr21:31780114-31782449~~chr21:31872029-31874883,
chr21:31785255-31787043~~chr21:31872357-31875603,
chr21:31785270-31788289~~chr21:31872029-31874883,
chr21:31785286-31787343~~chr21:31872323-31873497,
chr21:31800000-31825000~~chr21:31950000-31975000,
chr21:31825000-31850000~~chr21:31950000-31975000,
chr21:31850000-31875000~~chr21:31950000-31975000,
chr21:31850000-31875000~~chr21:31975000-32000000,
chr21:31850000-31875000~~chr21:32050000-32075000,
chr21:31850000-31875000~~chr21:32075000-32100000,
chr21:31850000-31875000~~chr21:32150000-32175000,
chr21:31850000-31875000~~chr21:32250000-32275000,
chr21:31850000-31875000~~chr21:32275000-32300000,
chr21:31850000-31875000~~chr21:32375000-32400000,
chr21:31850000-31875000~~chr21:32575000-32600000,
chr21:31850000-31875000~~chr21:32600000-32625000,
chr21:31871809-31875540~~chr21:32256411-32259438,
chr21:31872039-31874494~~chr21:32256511-32259378,
chr21:31872042-31874581~~chr21:32256342-32259326,
chr21:31872118-31875754~~chr21:32256367-32259995,
chr21:31872126-31874557~~chr21:32257195-32259363,
chr21:31872415-31873934~~chr21:32257185-32259313,
chr21:31872509-31873790~~chr21:32257190-32259329,
chr21:31872517-31873744~~chr21:32257476-32259450,
chr21:31872680-31874526~~chr21:32577373-32579026,
chr21:31875000-31900000~~chr21:32250000-32275000,
chr21:31907758-31909435~~chr21:32391718-32394270,
chr21:31925000-31950000~~chr21:32175000-32200000,
chr21:31933177-31934710~~chr21:32257228-32259294,
chr21:31933279-31934543~~chr21:32256462-32259302,
chr21:31950000-31975000~~chr21:32075000-32100000,
chr21:31950000-31975000~~chr21:32225000-32250000,
chr21:31950000-31975000~~chr21:32250000-32275000,
chr21:31950000-31975000~~chr21:33700000-33725000,
chr21:31975000-32000000~~chr21:32075000-32100000,
chr21:31975000-32000000~~chr21:32225000-32250000,
chr21:31975000-32000000~~chr21:32250000-32275000,
chr21:31975000-32000000~~chr21:32600000-32625000,
chr21:31991338-31992891~~chr21:32257485-32259289,
chr21:31991347-31993191~~chr21:32257436-32259286,
chr21:31991417-31992782~~chr21:32257395-32259361,
chr21:31991454-31992738~~chr21:32257485-32259262,
chr21:31991470-31992926~~chr21:32257476-32259450,
chr21:31991525-31992800~~chr21:32256274-32259275,
chr21:32000000-32025000~~chr21:32250000-32275000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, GSE43070, ENCSR794RDS, 4DNFIBN9K4V9, ENCSR852KQC, 4DNFIDSWKFF5, 4DNFIZ4F74QR, 4DNFI7H4II2V, ENCSR350NJV, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, ENCSR113OIR, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, ENCSR668RDP, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, ENCSR658RQQ, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFIK61ILGM, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, ENCSR000FDB, GSE105028, 4DNFIBKZK63V, 4DNFIQWD8ZYD, ENCSR662QKG, GSE94872, ENCSR499RVD, 4DNFIB7QTIMH, GSE126792, 4DNFIOX3BGNE, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, GSE52457, Direct, ENCSR314HAC, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIZGCA8AH, 4DNFIH7TH4MF, ENCSR194SRI, 4DNFIR8OU6QJ, 4DNFI6CWNUFL, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, 4DNFIPV5KFMK, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, 4DNFIL9M97T2, 4DNFI3A3VYWU, 4DNFIJ7OAIFQ, 4DNFIM2BMJ33, 4DNFIALNLR78, 4DNFIYDBBSE3, ENCSR379CII, 4DNFIEJEFCAM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, ENCSR255XYX, 4DNFIJ8JKKWJ, 4DNFIDKJFK2S, ENCSR933UZH, ENCSR094EIC, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR866FWQ, 4DNFI6EIFUZI, 4DNFII6AN691, GSE111537, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, ENCSR128RPG, 4DNFISTWNV9C, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFI8JFOAJT, 4DNFIOCW5AEM, 4DNFIQVMVRP6, 4DNFIC3HAU11, ENCSR338WUS, 4DNFI5LCW273, 4DNFINEQY95T, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: U2OS,HAP1,SLK,OCI-AML-3
- Cohesin-DEGs, number of studies: 5
- Cohesin-DEGs, study: GSE111537,GSE126635,GSE138937,GSE89799
- Cohesin-DEGs, subunit: CTCF,Rad21,SA2