Deatailed information for gene ENSG00000142156
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00008195
- Gene Symbol: COL6A1
- Ensembl ID: ENSG00000142156
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Gene locus: chr21:45981769-46005048
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs,
- Regulatory cohesin (double-evidenced):
chr21-45976610-45980161,
chr21-45980391-46011940,
chr21-46077624-46086016,
chr21-46089365-46089747,
chr21-46090704-46094379,
chr21-46094789-46101183,
chr21-46101525-46102239,
chr21-46107500-46107764,
chr21-46108827-46114343,
chr21-46114890-46141044,
chr21-46141781-46148753,
chr21-46149160-46156934,
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Co-expression with cohesin genes Rho = 0.4938
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.596
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.719
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: iPSC,NPC-H9,IMR-90,K-562,H1-hESC,A-549,HFF-hTERT,Motor-Neuron,HFFc6,HeLa-S3,K1,H9-hESC,H1-Mesenchymal,H1-Mesendoderm,HUES64
- Related loop:
chr21:45975000-46000000~~chr21:46075000-46100000,
chr21:45975000-46000000~~chr21:46100000-46125000,
chr21:45975000-46000000~~chr21:46125000-46150000,
chr21:45980579-45983656~~chr21:46091541-46093549,
chr21:45981275-45983496~~chr21:46096634-46099688,
chr21:45981311-45983330~~chr21:46091781-46093342,
chr21:46000000-46025000~~chr21:46100000-46125000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFIQYQWPF5, 4DNFI3CFMRID, ENCSR662QKG, 4DNFI6CWNUFL, 4DNFIMROE6N4, 4DNFIE8E4ANZ, ENCSR499RVD, 4DNFIB7QTIMH, 4DNFI5SUHCGZ, ENCSR852KQC, GSE120294, 4DNFIPV5KFMK, 4DNFIILDWK8M, 4DNFIOX3BGNE, 4DNFIW8TIFI5, 4DNFIZ4F74QR, 4DNFIBM714BP, 4DNFIA6NSSBJ, 4DNFIL5K3MA1, 4DNFIJWBWE41, 4DNFIV239W4L, GSE97394, 4DNFIIMZB6Y9, GSE52457, 4DNFIBT4EAKN, Direct, ENCSR314HAC, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFIYIAUEPW, ENCSR244BBG, 4DNFI8JFOAJT, ENCSR393LOP, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR305RTT, ENCSR247RGI, 4DNFI5LCW273, 4DNFI2J1ODWB, 4DNFIFI6NIKJ, 4DNFIFLJLIS5, GSE105028, 4DNFIDBIEXI7, 4DNFIBKZK63V, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
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Involved cell types for DEG evidence: SLK,OCI-AML-3,K-562,MCF-10A,U2OS
- Cohesin-DEGs, number of studies: 7
- Cohesin-DEGs, study: GSE111537,GSE154086,GSE131448,GSE138937,GSE89799
- Cohesin-DEGs, subunit: CTCF,Rad21,SA2