Deatailed information for gene ENSG00000142173
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00008199
- Gene Symbol: COL6A2
- Ensembl ID: ENSG00000142173
-
Gene locus: chr21:46098111-46132848
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs,
- Regulatory cohesin (double-evidenced):
chr21-44974593-45005352,
chr21-45124436-45132048,
chr21-45132786-45143934,
chr21-45145219-45145603,
chr21-45145953-45146151,
chr21-45147401-45149408,
chr21-45199827-45201411,
chr21-45201822-45203368,
chr21-45205334-45205638,
chr21-45206724-45207526,
chr21-45208102-45208832,
chr21-45209175-45210299,
chr21-45210540-45211407,
chr21-45211669-45211971,
chr21-45212249-45212719,
chr21-45218184-45218795,
chr21-45220299-45221191,
chr21-45221574-45224852,
chr21-45316533-45338135,
chr21-45339035-45339421,
chr21-45340328-45340876,
chr21-45341176-45342108,
chr21-45342847-45354233,
chr21-45487915-45502397,
chr21-45502617-45502900,
chr21-45503606-45519118,
chr21-45522806-45526243,
chr21-45549738-45561026,
chr21-45562524-45563196,
chr21-45569935-45572811,
chr21-45573733-45582416,
chr21-45583894-45584263,
chr21-45584853-45585303,
chr21-45585913-45586455,
chr21-45589437-45600222,
chr21-45600447-45600712,
chr21-45601341-45602522,
chr21-45604705-45605466,
chr21-45606044-45607726,
chr21-45607981-45608599,
chr21-45609031-45610012,
chr21-45612036-45613753,
chr21-45614225-45614405,
chr21-45614607-45619741,
chr21-45620266-45620531,
chr21-45621513-45621723,
chr21-45622497-45623240,
chr21-45624026-45624707,
chr21-45625655-45625928,
chr21-45629009-45638293,
chr21-45639143-45646446,
chr21-45674757-45675290,
chr21-45683752-45683985,
chr21-45694886-45695654,
chr21-45696519-45696831,
chr21-45698364-45699315,
chr21-45699705-45700787,
chr21-45725399-45726825,
chr21-45727437-45727820,
chr21-45733296-45733630,
chr21-45734384-45735074,
chr21-45736308-45737991,
chr21-45738350-45741362,
chr21-45741837-45742013,
chr21-45744922-45747032,
chr21-45747248-45748980,
chr21-45750046-45750324,
chr21-45751051-45751215,
chr21-45751471-45751832,
chr21-45756056-45756358,
chr21-45761715-45762780,
chr21-45763067-45763913,
chr21-45764145-45764583,
chr21-45764836-45765653,
chr21-45766057-45770234,
chr21-45770613-45771399,
chr21-45895276-45902934,
chr21-45905855-45907394,
chr21-45908410-45911399,
chr21-45911935-45913204,
chr21-45913451-45916964,
chr21-45917300-45917688,
chr21-45918949-45920374,
chr21-45921404-45925225,
chr21-45949436-45952197,
chr21-45953686-45954738,
chr21-45957735-45958770,
chr21-45959631-45960431,
chr21-45961061-45961698,
chr21-45961923-45962261,
chr21-45964738-45965740,
chr21-45966146-45976202,
chr21-45976610-45980161,
chr21-45980391-46011940,
chr21-46012151-46012523,
chr21-46017150-46017493,
chr21-46020986-46023884,
chr21-46024976-46026027,
chr21-46027808-46029515,
chr21-46031502-46031913,
chr21-46032392-46042639,
chr21-46043344-46043657,
chr21-46046458-46047697,
chr21-46048586-46063227,
chr21-46090704-46094379,
chr21-46094789-46101183,
chr21-46101525-46102239,
chr21-46107500-46107764,
chr21-46108827-46114343,
chr21-46114890-46141044,
chr21-46200854-46202398,
chr21-46202810-46203673,
chr21-46205119-46216728,
chr21-46217086-46221336,
chr21-46221787-46223056,
chr21-46223334-46230482,
-
Co-expression with cohesin genes Rho = 0.4053
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.619
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.858
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,TAMR-MCF7,MB157,K1,H1-Mesenchymal,H1-Mesendoderm,Hepatocyte-H9,MCF-7,HEK293T,K-562,A-549,HFFc6,HeLa-S3,H1-Trophectoderm,H9-hESC,iPSC,Hep-G2,H1-hESC,HCC1599,Motor-Neuron,HUES64,HUVEC,NPC-H9,CyT49-endoderm,Skin-Fibroblast,CC-2551,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:27500000-27525000~~chr21:46075000-46100000,
chr21:40475000-40500000~~chr21:46125000-46150000,
chr21:44975000-45000000~~chr21:46100000-46125000,
chr21:45125000-45150000~~chr21:46100000-46125000,
chr21:45200000-45225000~~chr21:46100000-46125000,
chr21:45325000-45350000~~chr21:46100000-46125000,
chr21:45500000-45525000~~chr21:46100000-46125000,
chr21:45550000-45575000~~chr21:46100000-46125000,
chr21:45575000-45600000~~chr21:46100000-46125000,
chr21:45600000-45625000~~chr21:46100000-46125000,
chr21:45625000-45650000~~chr21:46100000-46125000,
chr21:45675000-45700000~~chr21:46100000-46125000,
chr21:45725000-45750000~~chr21:46100000-46125000,
chr21:45725000-45750000~~chr21:46125000-46150000,
chr21:45750000-45775000~~chr21:46100000-46125000,
chr21:45900000-45925000~~chr21:46100000-46125000,
chr21:45950000-45975000~~chr21:46075000-46100000,
chr21:45950000-45975000~~chr21:46100000-46125000,
chr21:45950000-45975000~~chr21:46125000-46150000,
chr21:45969938-45971632~~chr21:46097212-46099767,
chr21:45972574-45974684~~chr21:46096717-46099725,
chr21:45972840-45974615~~chr21:46096634-46099688,
chr21:45972865-45974723~~chr21:46097212-46099767,
chr21:45972883-45974607~~chr21:46096709-46099711,
chr21:45972910-45974653~~chr21:46097148-46100727,
chr21:45973206-45974743~~chr21:46096706-46098645,
chr21:45973208-45974665~~chr21:46096817-46098665,
chr21:45975000-46000000~~chr21:46075000-46100000,
chr21:45975000-46000000~~chr21:46100000-46125000,
chr21:45975000-46000000~~chr21:46125000-46150000,
chr21:45980579-45983656~~chr21:46091541-46093549,
chr21:45981275-45983496~~chr21:46096634-46099688,
chr21:45981311-45983330~~chr21:46091781-46093342,
chr21:46000000-46025000~~chr21:46100000-46125000,
chr21:46025000-46050000~~chr21:46125000-46150000,
chr21:46100000-46125000~~chr21:46200000-46225000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFIQYQWPF5, 4DNFI3CFMRID, ENCSR662QKG, 4DNFIWZEN3FF, ENCSR194SRI, GSE43070, 4DNFI6CWNUFL, GSE94872, 4DNFIMROE6N4, GSE118716, 4DNFIE8E4ANZ, ENCSR499RVD, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, ENCSR794RDS, ENCSR852KQC, 4DNFIPV5KFMK, GSE116869, GSE120294, 4DNFIILDWK8M, 4DNFI7H4II2V, 4DNFIOX3BGNE, 4DNFIW8TIFI5, 4DNFIZ4F74QR, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIA6NSSBJ, 4DNFIREVU1Z5, 4DNFII6AN691, 4DNFIL5K3MA1, ENCSR381DCY, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFIV239W4L, GSE97394, 4DNFIOUSETUP, 4DNFIIMZB6Y9, 4DNFI1E6NJQJ, GSE52457, 4DNFIBT4EAKN, Direct, ENCSR314HAC, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFIYDBBSE3, 4DNFI8Y9SRP2, 4DNFIYIAUEPW, ENCSR244BBG, GSE116872, 4DNFI8JFOAJT, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR305RTT, ENCSR247RGI, ENCSR338WUS, 4DNFI2J1ODWB, 4DNFI5LCW273, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, 4DNFIFLJLIS5, GSE105028, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIBKZK63V, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: K-562,U2OS,SLK,OCI-AML-3
- Cohesin-DEGs, number of studies: 7
- Cohesin-DEGs, study: GSE111537,GSE138937,GSE131448,GSE89799
- Cohesin-DEGs, subunit: CTCF,Rad21,SA2