Deatailed information for gene ENSG00000142182
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00008201
- Gene Symbol: DNMT3L
- Ensembl ID: ENSG00000142182
-
Gene locus: chr21:44246338-44262216
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
chr21-42247763-42247993,
chr21-42248295-42251114,
chr21-42524067-42525788,
chr21-42526135-42528623,
chr21-42528891-42529866,
chr21-42530287-42531423,
chr21-42532164-42534148,
chr21-42534381-42538581,
chr21-42538854-42540670,
chr21-42540899-42541525,
chr21-42542597-42549588,
chr21-42875265-42875657,
chr21-42875983-42876584,
chr21-42876831-42877399,
chr21-42877653-42880442,
chr21-42881000-42881276,
chr21-42881848-42882396,
chr21-42885959-42886266,
chr21-42888778-42889585,
chr21-42890204-42894569,
chr21-42895138-42895610,
chr21-42896014-42896815,
chr21-42897274-42897953,
chr21-42898298-42898649,
chr21-42898938-42900986,
chr21-42971699-42976556,
chr21-42977567-42978245,
chr21-42978524-42979165,
chr21-42979449-42979775,
chr21-42980073-42980693,
chr21-42981060-42983699,
chr21-42984049-42984123,
chr21-42984399-42985953,
chr21-42986206-42987380,
chr21-42987592-42989052,
chr21-42989441-42990324,
chr21-42991464-42993497,
chr21-42993747-42994516,
chr21-42996864-42997865,
chr21-42998695-42999369,
chr21-43202414-43202849,
chr21-43203180-43204296,
chr21-43205526-43206063,
chr21-43206324-43207655,
chr21-43207866-43208349,
chr21-43208557-43212285,
chr21-43265406-43280154,
chr21-43280924-43283710,
chr21-43285633-43286421,
chr21-43287064-43289808,
chr21-43290025-43293553,
chr21-43294387-43294818,
chr21-43295496-43295735,
chr21-43296982-43309547,
chr21-43311036-43327583,
chr21-43328508-43351938,
chr21-43352261-43357227,
chr21-43357471-43370764,
chr21-43371758-43372139,
chr21-43372411-43378616,
chr21-43675087-43675363,
chr21-43676274-43676773,
chr21-43680040-43680760,
chr21-43680996-43681953,
chr21-43682266-43682785,
chr21-43683749-43684802,
chr21-43686488-43690745,
chr21-43691074-43692529,
chr21-43692796-43693611,
chr21-43693964-43694960,
chr21-43696123-43696928,
chr21-43697136-43699761,
chr21-43699974-43701662,
chr21-43745728-43760952,
chr21-43761154-43780032,
chr21-43823281-43831732,
chr21-43831999-43836730,
chr21-43838775-43839950,
chr21-43841496-43841801,
chr21-43842220-43843844,
chr21-43844363-43846062,
chr21-43846899-43848050,
chr21-43848774-43849113,
chr21-43849633-43862147,
chr21-43862655-43863537,
chr21-43863868-43868789,
chr21-43869455-43870414,
chr21-43871491-43871651,
chr21-43872321-43873703,
chr21-43874006-43875186,
chr21-43875610-43875942,
chr21-43876860-43877126,
chr21-43877444-43878583,
chr21-43878805-43881692,
chr21-43881940-43886603,
chr21-43887068-43887342,
chr21-43887684-43888899,
chr21-43890044-43891619,
chr21-43892018-43894317,
chr21-43895698-43896321,
chr21-43896892-43898172,
chr21-43898472-43898828,
chr21-43899414-43901125,
chr21-43902347-43902875,
chr21-43903389-43904929,
chr21-43905740-43906024,
chr21-43906608-43910716,
chr21-43911097-43912991,
chr21-43913332-43914290,
chr21-43914602-43914828,
chr21-43915079-43915725,
chr21-43916632-43919024,
chr21-43919860-43926811,
chr21-43949301-43950152,
chr21-43950547-43953443,
chr21-43953873-43955291,
chr21-43955636-43960547,
chr21-43960797-43961167,
chr21-43961712-43962335,
chr21-43962563-43962803,
chr21-43963229-43963703,
chr21-43964076-43965453,
chr21-43966040-43970312,
chr21-43970557-43970863,
chr21-43971213-43978635,
chr21-43978988-43982273,
chr21-43982497-43984376,
chr21-43984827-43986234,
chr21-43986653-43987350,
chr21-43987624-43990156,
chr21-43991128-43996175,
chr21-43996484-43996757,
chr21-43997663-43998474,
chr21-43999790-44003430,
chr21-44003656-44007434,
chr21-44007816-44008392,
chr21-44008742-44009011,
chr21-44009756-44016003,
chr21-44016585-44017233,
chr21-44018250-44019461,
chr21-44019691-44020615,
chr21-44021146-44022462,
chr21-44022967-44023469,
chr21-44024829-44026370,
chr21-44026684-44026973,
chr21-44027505-44027848,
chr21-44028245-44030150,
chr21-44030507-44031055,
chr21-44031429-44031975,
chr21-44032361-44032700,
chr21-44033569-44033850,
chr21-44034785-44035350,
chr21-44037935-44038524,
chr21-44038873-44039863,
chr21-44040458-44040984,
chr21-44041439-44041931,
chr21-44043223-44044061,
chr21-44044699-44045290,
chr21-44046465-44047576,
chr21-44048020-44048763,
chr21-44049059-44050644,
chr21-44051500-44052149,
chr21-44058034-44059019,
chr21-44060331-44060715,
chr21-44061133-44061570,
chr21-44062415-44062878,
chr21-44063088-44064391,
chr21-44065260-44065880,
chr21-44066159-44066445,
chr21-44067082-44068169,
chr21-44069413-44070104,
chr21-44070382-44070916,
chr21-44071581-44073072,
chr21-44074197-44074929,
chr21-44077348-44077570,
chr21-44078553-44078867,
chr21-44079138-44079687,
chr21-44081500-44084368,
chr21-44084897-44085581,
chr21-44086043-44086366,
chr21-44086762-44089972,
chr21-44090357-44091197,
chr21-44093882-44094111,
chr21-44094969-44096191,
chr21-44150556-44151003,
chr21-44153124-44161484,
chr21-44162052-44162520,
chr21-44163350-44164569,
chr21-44165080-44167741,
chr21-44170128-44171339,
chr21-44171699-44172159,
chr21-44172520-44173627,
chr21-44173865-44179849,
chr21-44237754-44244724,
chr21-44244978-44251442,
chr21-44251673-44252226,
chr21-44252559-44252895,
chr21-44253503-44259739,
chr21-44260974-44262029,
chr21-44262549-44268928,
chr21-44474734-44475102,
chr21-44477225-44484621,
chr21-44484854-44488529,
chr21-44488757-44489043,
chr21-44489948-44491135,
chr21-44493207-44494864,
chr21-44495074-44495354,
chr21-44496153-44497242,
chr21-44498019-44500523,
chr21-44681190-44682189,
chr21-44682701-44683068,
chr21-44685043-44685853,
chr21-44686092-44689539,
chr21-44694749-44695961,
chr21-44696518-44698783,
chr21-44699438-44700075,
chr21-45124436-45132048,
chr21-45132786-45143934,
chr21-45145219-45145603,
chr21-45145953-45146151,
chr21-45147401-45149408,
chr21-45895276-45902934,
chr21-45905855-45907394,
chr21-45908410-45911399,
chr21-45911935-45913204,
chr21-45913451-45916964,
chr21-45917300-45917688,
chr21-45918949-45920374,
chr21-45921404-45925225,
-
Co-expression with cohesin genes Rho = 0.0073
FDR = 0.3601
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.944
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.861
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,H1-Mesenchymal,H1-Mesendoderm,Olfactory,MCF-7,HEK293T,GM12878,K-562,HeLa-S3,H9-hESC,iPSC,HCT-116,H1-hESC,Motor-Neuron,U-937,CyT49-hESC,RT-112,KBM-7,CyT49-Gut,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:42050000-42075000~~chr21:44250000-44275000,
chr21:42225000-42250000~~chr21:44250000-44275000,
chr21:42525000-42550000~~chr21:44250000-44275000,
chr21:42875000-42900000~~chr21:44250000-44275000,
chr21:42975000-43000000~~chr21:44250000-44275000,
chr21:43200000-43225000~~chr21:44250000-44275000,
chr21:43275000-43300000~~chr21:44250000-44275000,
chr21:43300000-43325000~~chr21:44250000-44275000,
chr21:43350000-43375000~~chr21:44250000-44275000,
chr21:43675000-43700000~~chr21:44250000-44275000,
chr21:43750000-43775000~~chr21:44250000-44275000,
chr21:43825000-43850000~~chr21:44250000-44275000,
chr21:43850000-43875000~~chr21:44250000-44275000,
chr21:43875000-43900000~~chr21:44250000-44275000,
chr21:43900000-43925000~~chr21:44250000-44275000,
chr21:43950000-43975000~~chr21:44250000-44275000,
chr21:43975000-44000000~~chr21:44250000-44275000,
chr21:43979276-43980550~~chr21:44266775-44268941,
chr21:44000000-44025000~~chr21:44250000-44275000,
chr21:44025000-44050000~~chr21:44250000-44275000,
chr21:44050000-44075000~~chr21:44250000-44275000,
chr21:44075000-44100000~~chr21:44250000-44275000,
chr21:44150000-44175000~~chr21:44250000-44275000,
chr21:44250000-44275000~~chr21:44475000-44500000,
chr21:44250000-44275000~~chr21:44675000-44700000,
chr21:44250000-44275000~~chr21:45125000-45150000,
chr21:44250000-44275000~~chr21:45900000-45925000,
chr21:5025000-5050000~~chr21:44225000-44250000,
chr21:5025000-5050000~~chr21:44250000-44275000,
chr21:5050000-5075000~~chr21:44250000-44275000,
chr21:5100000-5125000~~chr21:44250000-44275000,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIH2A7IKF, 4DNFI8649RQJ, 4DNFIQYQWPF5, GSE95015, 4DNFI5CGQ46V, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, GSE118716, 4DNFIE8E4ANZ, ENCSR545YBD, ENCSR852KQC, 4DNFIDSWKFF5, 4DNFIZ4F74QR, ENCSR410MDC, 4DNFIXU2KPNQ, 4DNFI6EIFUZI, 4DNFIBM714BP, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIYD8LO9Z, GSE155380, 4DNFICEGAHRC, 4DNFIE8T8JZ8, GSE52457, Direct, 4DNFIXWCLD4M, GSE165038, 4DNFIV56OFE3, 4DNFI1UEG1HD, GSE101921, 4DNFIK61ILGM, ENCSR228TUX, 4DNFIQRTP7NM, GSE44267, 4DNFIOCW5AEM, 4DNFIPAF4PYT, 4DNFIC3HAU11, ENCSR338WUS, 4DNFI7XAZNNQ, 4DNFIDKJFK2S, 4DNFINEQY95T, 4DNFILIM6FDL, 4DNFIDBIEXI7, 4DNFIP71EWXC, 4DNFIQ2687RT, GSE105028, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIVSCH2CH
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence: HAP1,HeLa
- Cohesin-DEGs, number of studies: 2
- Cohesin-DEGs, study: GSE71420,GSE126635
- Cohesin-DEGs, subunit: CTCF,ESCO1