Deatailed information for gene ENSG00000154645
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00009784
- Gene Symbol: CHODL
- Ensembl ID: ENSG00000154645
-
Gene locus: chr21:17901262-18267373
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.3010
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.694
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,Keratinocytes192627,Aorta,GM12892,K1,hTERT-HME1,Spleen,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,GM19239,HEK293T,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,iPSC,REC-1,ARPE-19,HCT-116,OCI-AML-3,Hep-G2,HT-1197,Kelly,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,NaiveB,GM19240,HUES64,SU-DHL-4,CyT49-hESC,HUVEC,HL-60,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,KBM-7,Jurkat,CC-2551,CyT49-Gut,HAP1,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:13450000-13475000~~chr21:18100000-18125000,
chr21:17350000-17375000~~chr21:17900000-17925000,
chr21:17350000-17375000~~chr21:18250000-18275000,
chr21:17385938-17388768~~chr21:17924257-17926724,
chr21:17386482-17388045~~chr21:17924411-17926774,
chr21:17600000-17625000~~chr21:17900000-17925000,
chr21:17650000-17675000~~chr21:17900000-17925000,
chr21:17650000-17675000~~chr21:18000000-18025000,
chr21:17650000-17675000~~chr21:18050000-18075000,
chr21:17650000-17675000~~chr21:18225000-18250000,
chr21:17650000-17675000~~chr21:18250000-18275000,
chr21:17675000-17700000~~chr21:17875000-17900000,
chr21:17675000-17700000~~chr21:17900000-17925000,
chr21:17675000-17700000~~chr21:17925000-17950000,
chr21:17675000-17700000~~chr21:17975000-18000000,
chr21:17675000-17700000~~chr21:18025000-18050000,
chr21:17675000-17700000~~chr21:18100000-18125000,
chr21:17675000-17700000~~chr21:18200000-18225000,
chr21:17675000-17700000~~chr21:18225000-18250000,
chr21:17677615-17680352~~chr21:17901964-17904398,
chr21:17677615-17680352~~chr21:17923881-17926128,
chr21:17677812-17680265~~chr21:17901949-17904160,
chr21:17677812-17680265~~chr21:17924313-17926645,
chr21:17677823-17680312~~chr21:17901986-17904341,
chr21:17677823-17680312~~chr21:17924291-17927223,
chr21:17677849-17680474~~chr21:17901176-17904403,
chr21:17677849-17680474~~chr21:17924257-17926724,
chr21:17677927-17680289~~chr21:17902014-17904745,
chr21:17677927-17680289~~chr21:17924240-17926680,
chr21:17678060-17680287~~chr21:17901956-17904369,
chr21:17678060-17680287~~chr21:17924279-17927173,
chr21:17678109-17680458~~chr21:17901397-17904317,
chr21:17678109-17680458~~chr21:17924273-17926731,
chr21:17678125-17680282~~chr21:17901961-17904290,
chr21:17678127-17680159~~chr21:17902380-17904101,
chr21:17678127-17680159~~chr21:17924472-17926784,
chr21:17678133-17680457~~chr21:17902253-17904403,
chr21:17678134-17680490~~chr21:17901970-17904434,
chr21:17678134-17680490~~chr21:17924283-17926719,
chr21:17678148-17680221~~chr21:17901122-17904107,
chr21:17678148-17680221~~chr21:17924397-17926788,
chr21:17678179-17680164~~chr21:17901225-17904031,
chr21:17678183-17680160~~chr21:17902324-17903958,
chr21:17678183-17680160~~chr21:17924495-17926797,
chr21:17678186-17680190~~chr21:17901236-17904006,
chr21:17678201-17680185~~chr21:17902269-17904057,
chr21:17678201-17680185~~chr21:17924411-17926774,
chr21:17678230-17680476~~chr21:17901968-17904401,
chr21:17678230-17680476~~chr21:17924284-17926668,
chr21:17678232-17680291~~chr21:17902267-17904328,
chr21:17678232-17680291~~chr21:17924273-17926705,
chr21:17678243-17680235~~chr21:17902262-17904303,
chr21:17678243-17680235~~chr21:17924376-17926721,
chr21:17678249-17680466~~chr21:17902018-17904116,
chr21:17678249-17680466~~chr21:17924313-17926669,
chr21:17678253-17680475~~chr21:17902276-17904784,
chr21:17678253-17680475~~chr21:17924113-17926084,
chr21:17678257-17680250~~chr21:17901952-17904689,
chr21:17678257-17680250~~chr21:17924370-17926081,
chr21:17678261-17680309~~chr21:17902245-17904789,
chr21:17678261-17680309~~chr21:17924244-17926698,
chr21:17678268-17680024~~chr21:17901970-17904396,
chr21:17678268-17680024~~chr21:17924382-17926045,
chr21:17678273-17680232~~chr21:17901976-17904341,
chr21:17678273-17680232~~chr21:17924311-17926659,
chr21:17678274-17680496~~chr21:17901990-17904210,
chr21:17678274-17680496~~chr21:17924317-17926677,
chr21:17678275-17679993~~chr21:17902250-17904345,
chr21:17678275-17679993~~chr21:17924375-17926695,
chr21:17678276-17680252~~chr21:17902239-17904213,
chr21:17678276-17680252~~chr21:17924115-17926703,
chr21:17678279-17680475~~chr21:17902065-17904288,
chr21:17678299-17680259~~chr21:17924330-17926663,
chr21:17678306-17680047~~chr21:17901389-17904158,
chr21:17678306-17680047~~chr21:17924232-17925966,
chr21:17678316-17680058~~chr21:17902232-17904144,
chr21:17678316-17680058~~chr21:17924329-17925933,
chr21:17678318-17680109~~chr21:17924273-17926069,
chr21:17678321-17680260~~chr21:17902253-17904292,
chr21:17678321-17680260~~chr21:17924254-17926747,
chr21:17678321-17680290~~chr21:17901939-17904304,
chr21:17678321-17680290~~chr21:17924188-17926114,
chr21:17678335-17680284~~chr21:17902210-17904283,
chr21:17678360-17680330~~chr21:17902269-17904310,
chr21:17678360-17680330~~chr21:17924174-17926108,
chr21:17678382-17680217~~chr21:17902287-17903894,
chr21:17678406-17680047~~chr21:17924235-17926067,
chr21:17678407-17680331~~chr21:17902187-17904333,
chr21:17678407-17680331~~chr21:17924341-17926046,
chr21:17678440-17680173~~chr21:17902403-17904032,
chr21:17678440-17680173~~chr21:17924485-17926802,
chr21:17678442-17679985~~chr21:17924612-17926635,
chr21:17678447-17680004~~chr21:17924354-17926683,
chr21:17678473-17680046~~chr21:17902405-17904120,
chr21:17678473-17680046~~chr21:17924396-17926719,
chr21:17678482-17679945~~chr21:17901964-17904175,
chr21:17678505-17680271~~chr21:17901920-17904293,
chr21:17678516-17679996~~chr21:17924566-17926674,
chr21:17688092-17690151~~chr21:17902276-17904784,
chr21:17688092-17690151~~chr21:17924113-17926084,
chr21:17688135-17689984~~chr21:17902187-17904333,
chr21:17688142-17689741~~chr21:17901956-17904369,
chr21:17688212-17690371~~chr21:17901397-17904317,
chr21:17688212-17690371~~chr21:17924273-17926731,
chr21:17688304-17689964~~chr21:17924311-17926659,
chr21:17688306-17691525~~chr21:17901964-17904175,
chr21:17688429-17689633~~chr21:17902269-17904057,
chr21:17700000-17725000~~chr21:17900000-17925000,
chr21:17725000-17750000~~chr21:17900000-17925000,
chr21:17750000-17775000~~chr21:17900000-17925000,
chr21:17775000-17800000~~chr21:17900000-17925000,
chr21:17775000-17800000~~chr21:18100000-18125000,
chr21:17800000-17825000~~chr21:17900000-17925000,
chr21:17817784-17820842~~chr21:17901964-17904398,
chr21:17818177-17820852~~chr21:17902238-17904394,
chr21:17825000-17850000~~chr21:18000000-18025000,
chr21:17825000-17850000~~chr21:18225000-18250000,
chr21:17850000-17875000~~chr21:18200000-18225000,
chr21:17850000-17875000~~chr21:18225000-18250000,
chr21:17875000-17900000~~chr21:18200000-18225000,
chr21:17924283-17926719~~chr21:18368377-18371085,
chr21:17924291-17927223~~chr21:18368401-18369908,
chr21:17925000-17950000~~chr21:18025000-18050000,
chr21:17925000-17950000~~chr21:18200000-18225000,
chr21:17925000-17950000~~chr21:18250000-18275000,
chr21:17925000-17950000~~chr21:18275000-18300000,
chr21:17925000-17950000~~chr21:18350000-18375000,
chr21:17925000-17950000~~chr21:18475000-18500000,
chr21:17925000-17950000~~chr21:20875000-20900000,
chr21:17925000-17950000~~chr21:20950000-20975000,
chr21:18000000-18025000~~chr21:18225000-18250000,
chr21:18000000-18025000~~chr21:18500000-18525000,
chr21:18000000-18025000~~chr21:20800000-20825000,
chr21:18025000-18050000~~chr21:18175000-18200000,
chr21:18025000-18050000~~chr21:18200000-18225000,
chr21:18025000-18050000~~chr21:18225000-18250000,
chr21:18025000-18050000~~chr21:18250000-18275000,
chr21:18025000-18050000~~chr21:18350000-18375000,
chr21:18040096-18042223~~chr21:18204238-18205925,
chr21:18040096-18042223~~chr21:18368086-18370037,
chr21:18040191-18042074~~chr21:18265543-18266810,
chr21:18040385-18042120~~chr21:18204504-18205995,
chr21:18040385-18042120~~chr21:18264749-18266732,
chr21:18040385-18042120~~chr21:18368469-18370118,
chr21:18040504-18041951~~chr21:18204494-18205803,
chr21:18040579-18041906~~chr21:18204448-18205978,
chr21:18040589-18041899~~chr21:18368433-18370077,
chr21:18040618-18041839~~chr21:18368630-18369881,
chr21:18050000-18075000~~chr21:18225000-18250000,
chr21:18100000-18125000~~chr21:18250000-18275000,
chr21:18175000-18200000~~chr21:18500000-18525000,
chr21:18225000-18250000~~chr21:18325000-18350000,
chr21:18225000-18250000~~chr21:18500000-18525000,
chr21:18250000-18275000~~chr21:25300000-25325000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, GSE43070, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, ENCSR794RDS, 4DNFIBN9K4V9, ENCSR852KQC, ENCSR361AYD, GSE103148, 4DNFI7H4II2V, 4DNFIZ4F74QR, ENCSR350NJV, 4DNFIEYQ5ZIR, 4DNFIA6NSSBJ, 4DNFI9VXTBE2, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, GSE99541, ENCSR668RDP, 4DNFIL5K3MA1, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, ENCSR658RQQ, ENCSR299VMZ, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFIK61ILGM, GSE108869, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, ENCSR000FDB, 4DNFI7XAZNNQ, ENCSR527RXH, GSE105028, ENCSR833CMG, 4DNFIBKZK63V, ENCSR033GUP, 4DNFIQWD8ZYD, GSE87112, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, 4DNFIB7QTIMH, 4DNFIOX3BGNE, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, GSE52457, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFI6CWNUFL, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, GSE84022, 4DNFIPV5KFMK, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, ENCSR123UVP, 4DNFIL9M97T2, 4DNFIJBJ6QVH, 4DNFI3A3VYWU, 4DNFIJ7OAIFQ, 4DNFIM2BMJ33, 4DNFIX4PJKXZ, 4DNFIBY3UHJB, 4DNFIYDBBSE3, ENCSR386KHY, 4DNFIEJEFCAM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, ENCSR404HWQ, 4DNFIE5TEYK7, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, ENCSR094EIC, GSE58752, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIILDWK8M, ENCSR866FWQ, 4DNFI6EIFUZI, 4DNFII6AN691, GSE111537, GSE131580, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, 4DNFIOUSETUP, ENCSR752QCX, ENCSR128RPG, ENCSR312TUD, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI5LCW273, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .