Deatailed information for gene ENSG00000156239

Check detailed explainations here

  • Basic information
  • CohesinDB ID: CDBG00009954
  • Gene Symbol: N6AMT1
  • Ensembl ID: ENSG00000156239
  • Gene locus: chr21:28872190-28885371 Strand: -
  • Gene type: protein_coding
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): True
  • All evidenced type: Interaction,DEGs,
  • Regulatory cohesin (double-evidenced): chr21-28867436-28868005, chr21-28871320-28872051, chr21-28878899-28879451, chr21-28880405-28880743, chr21-28882550-28883452, chr21-28883769-28886504, chr21-28888371-28888599, chr21-28938796-28941472,
  • Co-expression with cohesin genes Rho = 0.5976 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.300
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.833
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: SU-DHL-4
  • Related loop: chr21:28870801-28871959~~chr21:28939416-28941239,
  • Cohesin-loop type: Direct,ChIAPET
  • Cohesin-loop study: ENCSR658RQQ, Direct
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: True
  • Involved cell types for DEG evidence: CMK,SLK,HeLa-S3,P3HR-1
  • Cohesin-DEGs, number of studies: 4
  • Cohesin-DEGs, study: GSE140651,GSE154086,GSE138937,GSE130558
  • Cohesin-DEGs, subunit: WAPL,CTCF,SMC1,SA2
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