Deatailed information for gene ENSG00000157617
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00010117
- Gene Symbol: C2CD2
- Ensembl ID: ENSG00000157617
-
Gene locus: chr21:41885111-41954018
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs,
- Regulatory cohesin (double-evidenced):
chr21-41200720-41201085,
chr21-41203279-41204508,
chr21-41207311-41209537,
chr21-41213457-41213771,
chr21-41214800-41215219,
chr21-41216467-41217270,
chr21-41217596-41218016,
chr21-41218863-41219208,
chr21-41219451-41220069,
chr21-41221113-41223031,
chr21-41223341-41223563,
chr21-41224862-41225153,
chr21-41279309-41286918,
chr21-41287349-41287624,
chr21-41289470-41289790,
chr21-41290198-41290717,
chr21-41291671-41292309,
chr21-41295717-41296311,
chr21-41425596-41431302,
chr21-41431562-41433383,
chr21-41433595-41438072,
chr21-41438421-41440223,
chr21-41440635-41442106,
chr21-41442477-41454571,
chr21-41600668-41607029,
chr21-41607264-41617134,
chr21-41617741-41618159,
chr21-41619036-41619135,
chr21-41620001-41623327,
chr21-41649662-41650037,
chr21-41650707-41652356,
chr21-41653070-41654701,
chr21-41656820-41657981,
chr21-41658412-41661789,
chr21-41662180-41667516,
chr21-41667934-41670919,
chr21-41671179-41674646,
chr21-41774945-41781439,
chr21-41782169-41784881,
chr21-41785377-41785632,
chr21-41785969-41787549,
chr21-41793143-41793460,
chr21-41794325-41795136,
chr21-41796584-41797209,
chr21-41797596-41797844,
chr21-41798299-41798682,
chr21-41799784-41800050,
chr21-41814372-41823630,
chr21-41850983-41851877,
chr21-41852110-41853345,
chr21-41853692-41855866,
chr21-41857229-41860002,
chr21-41861355-41866024,
chr21-41866387-41867228,
chr21-41867863-41869049,
chr21-41871292-41871941,
chr21-41872703-41874138,
chr21-41874717-41875401,
chr21-41876290-41881136,
chr21-41882621-41883088,
chr21-41883793-41886940,
chr21-41888988-41890386,
chr21-41891226-41891944,
chr21-41892186-41893065,
chr21-41893432-41894097,
chr21-41894414-41896406,
chr21-41896799-41898324,
chr21-41898621-41901470,
chr21-41903610-41904218,
chr21-41905344-41905910,
chr21-41907516-41908154,
chr21-41908433-41908738,
chr21-41912525-41913615,
chr21-41913829-41916045,
chr21-41916566-41919291,
chr21-41919607-41924881,
chr21-41925348-41930095,
chr21-41930445-41934884,
chr21-41935426-41935789,
chr21-41936840-41937153,
chr21-41939422-41940001,
chr21-41942461-41944496,
chr21-41947046-41947327,
chr21-41947715-41949276,
chr21-41950243-41951395,
chr21-41951919-41960803,
chr21-41972592-41976832,
chr21-41977344-41977846,
chr21-41982603-41983049,
chr21-41985616-41986038,
chr21-41991035-41991464,
chr21-41992633-41992921,
chr21-41993548-41994398,
chr21-41995205-41996303,
chr21-42001760-42004907,
chr21-42005507-42006937,
chr21-42007533-42014157,
chr21-42016245-42016751,
chr21-42017482-42017833,
chr21-42018954-42023204,
chr21-42024136-42028162,
chr21-42072432-42077357,
chr21-42077774-42087507,
chr21-42088172-42088785,
chr21-42089069-42090481,
chr21-42091730-42092368,
chr21-42092772-42095377,
chr21-42096641-42096982,
chr21-42097185-42102518,
chr21-42102731-42103045,
chr21-42103416-42126825,
chr21-42248295-42251114,
chr21-42251485-42252063,
chr21-42252355-42253740,
chr21-42254531-42254923,
chr21-42255135-42266245,
chr21-42267072-42268447,
chr21-42268710-42270140,
chr21-42271071-42271815,
chr21-42272186-42275483,
chr21-42275794-42277332,
chr21-42278585-42283213,
chr21-42283471-42284076,
chr21-42284283-42285457,
chr21-42285916-42288654,
chr21-42289750-42290327,
chr21-42290743-42296744,
chr21-42298296-42298540,
chr21-42299343-42300483,
chr21-42422915-42428748,
chr21-42429069-42429373,
chr21-42429892-42431565,
chr21-42432008-42432290,
chr21-42433805-42434474,
chr21-42434904-42435230,
chr21-42436840-42441137,
chr21-42442018-42442307,
chr21-42443007-42454584,
chr21-42473712-42475050,
chr21-42475275-42477409,
chr21-42478322-42479169,
chr21-42480568-42481138,
chr21-42482081-42482692,
chr21-42485826-42486174,
chr21-42486445-42487207,
chr21-42488988-42489705,
chr21-42494711-42497356,
chr21-42499096-42500557,
chr21-42676262-42677139,
chr21-42677464-42680918,
chr21-42681246-42681895,
chr21-42682647-42686811,
chr21-42687678-42689455,
chr21-42689874-42691124,
chr21-42692085-42693894,
chr21-42694195-42694540,
chr21-42695409-42697261,
chr21-42697642-42697964,
chr21-42698273-42698662,
chr21-42699236-42699751,
chr21-42749851-42750087,
chr21-42750791-42751500,
chr21-42751805-42752432,
chr21-42753545-42754647,
chr21-42755098-42758193,
chr21-42758449-42764685,
chr21-42764938-42765068,
chr21-42765386-42766176,
chr21-42766664-42772453,
chr21-42772703-42773259,
chr21-42773602-42774406,
chr21-42774814-42776288,
chr21-43296982-43309547,
chr21-43311036-43327583,
chr21-43574497-43576116,
chr21-43576516-43576782,
chr21-43578473-43579527,
chr21-43581013-43581404,
chr21-43581641-43582576,
chr21-43582859-43583337,
chr21-43583553-43584232,
chr21-43584938-43588325,
chr21-43589018-43591020,
chr21-43591407-43592525,
chr21-43592960-43594483,
chr21-43595004-43602071,
-
Co-expression with cohesin genes Rho = 0.4443
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.445
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.852
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,TAMR-MCF7,MB157,Keratinocytes192627,Aorta,K1,hTERT-HME1,H1-Mesenchymal,H1-Mesendoderm,Olfactory,MCF-7,HEK293T,SARS-Cov2-olfactory,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,KU-19-19,HT-1376,H1-hESC,GM19238,HCC1599,Motor-Neuron,BMEC,SU-DHL-4,HUVEC,RT-112,Skin-Fibroblast,CC-2551,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:41200000-41225000~~chr21:41950000-41975000,
chr21:41275000-41300000~~chr21:41900000-41925000,
chr21:41425000-41450000~~chr21:41925000-41950000,
chr21:41600000-41625000~~chr21:41925000-41950000,
chr21:41600000-41625000~~chr21:41950000-41975000,
chr21:41609812-41611395~~chr21:41916134-41918303,
chr21:41611484-41613992~~chr21:41877559-41880450,
chr21:41611517-41613753~~chr21:41916134-41918303,
chr21:41611530-41614015~~chr21:41916406-41918311,
chr21:41611760-41613474~~chr21:41916617-41917842,
chr21:41650000-41675000~~chr21:41900000-41925000,
chr21:41650000-41675000~~chr21:41950000-41975000,
chr21:41673182-41674339~~chr21:41916134-41918303,
chr21:41775000-41800000~~chr21:41925000-41950000,
chr21:41815722-41818125~~chr21:41916406-41918311,
chr21:41815737-41818316~~chr21:41895209-41897144,
chr21:41815741-41818325~~chr21:41894768-41897068,
chr21:41815741-41818325~~chr21:41916134-41918303,
chr21:41815772-41818348~~chr21:41916377-41918020,
chr21:41815787-41818293~~chr21:41916417-41918064,
chr21:41815787-41818293~~chr21:41931609-41933343,
chr21:41850000-41875000~~chr21:41950000-41975000,
chr21:41875000-41900000~~chr21:41975000-42000000,
chr21:41875000-41900000~~chr21:42000000-42025000,
chr21:41875000-41900000~~chr21:42100000-42125000,
chr21:41876408-41880502~~chr21:42116480-42118891,
chr21:41877545-41880451~~chr21:42008763-42011946,
chr21:41900000-41925000~~chr21:42100000-42125000,
chr21:41900000-41925000~~chr21:42275000-42300000,
chr21:41900000-41925000~~chr21:42475000-42500000,
chr21:41900000-41925000~~chr21:42675000-42700000,
chr21:41900000-41925000~~chr21:42750000-42775000,
chr21:41925000-41950000~~chr21:42075000-42100000,
chr21:41925000-41950000~~chr21:42100000-42125000,
chr21:41925000-41950000~~chr21:42250000-42275000,
chr21:41925000-41950000~~chr21:43300000-43325000,
chr21:41925000-41950000~~chr21:43575000-43600000,
chr21:41931617-41935016~~chr21:42116717-42118997,
chr21:41931627-41934942~~chr21:42106891-42109246,
chr21:41931627-41934942~~chr21:42116645-42118612,
chr21:41931641-41934899~~chr21:42116704-42118362,
chr21:41931667-41934991~~chr21:42106648-42108930,
chr21:41931667-41934991~~chr21:42116635-42118386,
chr21:41931668-41934949~~chr21:42116674-42118422,
chr21:41931678-41934978~~chr21:42116708-42118415,
chr21:41931733-41935274~~chr21:42116276-42118975,
chr21:41931738-41935261~~chr21:42116256-42118602,
chr21:41933026-41935331~~chr21:42116759-42118352,
chr21:41933042-41935253~~chr21:42116707-42118594,
chr21:41933531-41934760~~chr21:42116715-42119049,
chr21:41950000-41975000~~chr21:42100000-42125000,
chr21:41950000-41975000~~chr21:42275000-42300000,
chr21:41950000-41975000~~chr21:42425000-42450000,
chr21:41950000-41975000~~chr21:42475000-42500000,
chr21:41952495-41953705~~chr21:42008731-42011959,
chr21:41957072-41959223~~chr21:42008838-42011899,
chr21:41957418-41959149~~chr21:42008452-42012075,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFI3CFMRID, GSE95015, GSE43070, GSE94872, 4DNFIMROE6N4, GSE118716, 4DNFIE8E4ANZ, GSE108787, GSE116869, 4DNFI5SUHCGZ, ENCSR852KQC, 4DNFIZ4F74QR, 4DNFIW8TIFI5, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFI6EIFUZI, 4DNFIA6NSSBJ, 4DNFIBM714BP, 4DNFIF2D3TL9, GSE99541, ENCSR668RDP, GSE155380, ENCSR981FNA, ENCSR587DSF, 4DNFIL9M97T2, 4DNFIE8T8JZ8, ENCSR128RPG, GSE52457, 4DNFIBT4EAKN, ENCSR507AHE, ENCSR658RQQ, 4DNFIM2BMJ33, Direct, ENCSR314HAC, 4DNFISPUVQHA, GSE116872, ENCSR244BBG, GSE44267, ENCSR991JXX, 4DNFIAWVDQ8C, 4DNFIC3HAU11, ENCSR305RTT, ENCSR404HWQ, ENCSR255XYX, 4DNFIVJ3IIQL, ENCSR527RXH, ENCSR933UZH, 4DNFIDKJFK2S, 4DNFIDBIEXI7, 4DNFIFLJLIS5, GSE105028, GSE58752, 4DNFIH7TH4MF, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: SLK,MCF-10A,U2OS,HeLa-S3,HeLa
- Cohesin-DEGs, number of studies: 8
- Cohesin-DEGs, study: GSE101921,GSE71420,GSE154086,GSE138937,GSE89799,GSE130558
- Cohesin-DEGs, subunit: WAPL,CTCF,Rad21,SA2