Deatailed information for gene ENSG00000159079
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00010287
- Gene Symbol: CFAP298
- Ensembl ID: ENSG00000159079
-
Gene locus: chr21:32599353-32612377
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs,
- Regulatory cohesin (double-evidenced):
chr21-31173153-31175305,
chr21-31175520-31176738,
chr21-31177211-31177721,
chr21-31177999-31183023,
chr21-31183657-31184957,
chr21-31185387-31185986,
chr21-31188916-31189109,
chr21-31194439-31202575,
chr21-31705596-31706060,
chr21-31706429-31706648,
chr21-31707652-31707856,
chr21-31708059-31708349,
chr21-31710228-31711264,
chr21-31711898-31712847,
chr21-31713383-31713742,
chr21-31714124-31714482,
chr21-31716096-31716505,
chr21-31717839-31718283,
chr21-31719496-31719724,
chr21-31720387-31721045,
chr21-31722659-31722899,
chr21-31725854-31726651,
chr21-31727461-31727835,
chr21-31728911-31729266,
chr21-31729532-31733952,
chr21-31734532-31735896,
chr21-31737021-31738863,
chr21-31739215-31739559,
chr21-31744136-31744783,
chr21-31745048-31745345,
chr21-31749551-31751240,
chr21-31780386-31782267,
chr21-31783965-31788184,
chr21-31851015-31851259,
chr21-31851947-31852172,
chr21-31855210-31855593,
chr21-31857356-31857673,
chr21-31862100-31862414,
chr21-31863205-31863716,
chr21-31864316-31868880,
chr21-31869101-31869249,
chr21-31870626-31876394,
chr21-31977738-31978118,
chr21-31979137-31979420,
chr21-31980189-31981046,
chr21-31983009-31983792,
chr21-31985307-31986138,
chr21-31986414-31988047,
chr21-31988683-31989200,
chr21-31990202-31990791,
chr21-31991513-31992746,
chr21-31993758-31994696,
chr21-31996734-31997182,
chr21-31998160-31999689,
chr21-32075068-32075437,
chr21-32076251-32077638,
chr21-32080346-32080864,
chr21-32082220-32082966,
chr21-32083237-32083710,
chr21-32084044-32084525,
chr21-32088574-32088818,
chr21-32092232-32092466,
chr21-32093737-32094360,
chr21-32095485-32097938,
chr21-32098632-32099431,
chr21-32099703-32101172,
chr21-32276135-32276434,
chr21-32277427-32280137,
chr21-32283338-32283575,
chr21-32283821-32284221,
chr21-32284918-32285277,
chr21-32287224-32287305,
chr21-32294066-32294397,
chr21-32295053-32296161,
chr21-32298101-32299158,
chr21-32299751-32300868,
chr21-32301692-32301838,
chr21-32304893-32304989,
chr21-32305776-32306803,
chr21-32307314-32307797,
chr21-32308617-32310741,
chr21-32311435-32312117,
chr21-32312390-32312669,
chr21-32313137-32313329,
chr21-32314800-32315445,
chr21-32315753-32317229,
chr21-32317515-32318325,
chr21-32319081-32319441,
chr21-32319827-32320459,
chr21-32320782-32321118,
chr21-32321609-32323171,
chr21-32323561-32324126,
chr21-32324577-32324835,
chr21-32348772-32352012,
chr21-32352521-32353449,
chr21-32353738-32354082,
chr21-32355525-32355982,
chr21-32357912-32358164,
chr21-32358689-32359007,
chr21-32359599-32360314,
chr21-32361562-32361824,
chr21-32362356-32363268,
chr21-32364267-32365213,
chr21-32365681-32366109,
chr21-32368660-32369139,
chr21-32371758-32373234,
chr21-32374258-32374575,
chr21-32377005-32377825,
chr21-32379033-32379799,
chr21-32381416-32385002,
chr21-32385478-32386069,
chr21-32386291-32386639,
chr21-32386870-32387447,
chr21-32388340-32390195,
chr21-32392163-32394318,
chr21-32394704-32394805,
chr21-32397459-32397677,
chr21-32401093-32405487,
chr21-32405735-32406834,
chr21-32408217-32408697,
chr21-32409703-32410211,
chr21-32410923-32416711,
chr21-32417894-32418785,
chr21-32420222-32420681,
chr21-32422799-32425391,
chr21-32450290-32453267,
chr21-32455431-32458336,
chr21-32458592-32459810,
chr21-32460801-32461622,
chr21-32462635-32464978,
chr21-32465888-32466157,
chr21-32467324-32467836,
chr21-32468636-32469297,
chr21-32470295-32471149,
chr21-32471386-32471935,
chr21-32472299-32473135,
chr21-32473670-32479773,
chr21-32480464-32480858,
chr21-32482032-32482291,
chr21-32482533-32483360,
chr21-32483950-32485031,
chr21-32485253-32485688,
chr21-32486141-32486482,
chr21-32491080-32492695,
chr21-32492896-32494129,
chr21-32494469-32496274,
chr21-32498609-32500453,
chr21-32501923-32502381,
chr21-32502858-32503479,
chr21-32506555-32507085,
chr21-32507382-32508856,
chr21-32509210-32510394,
chr21-32511129-32511347,
chr21-32514665-32515061,
chr21-32515682-32517377,
chr21-32517976-32518345,
chr21-32519053-32526591,
chr21-32594251-32594977,
chr21-32595506-32596052,
chr21-32596424-32597923,
chr21-32598775-32602954,
chr21-32603193-32603581,
chr21-32604431-32605130,
chr21-32610128-32610562,
chr21-32610963-32613801,
chr21-32614942-32615265,
chr21-32726512-32729587,
chr21-32732552-32732879,
-
Co-expression with cohesin genes Rho = 0.6256
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.247
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.889
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,GM12892,K1,hTERT-HME1,H1-Mesenchymal,Hepatocyte-H9,MCF-7,GM12891,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,KU-19-19,iPSC,Liver,ARPE-19,HCT-116,OCI-AML-3,REC-1,Hep-G2,HT-1197,Kelly,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,U-937,SU-DHL-4,HUVEC,HL-60,NPC-H9,RT-112,Skin-Fibroblast,KBM-7,CyT49-Gut,CC-2551,HAP1,HFF-hTERT,MCF7-FASR,U251
- Related loop:
chr21:22775000-22800000~~chr21:32575000-32600000,
chr21:25725000-25750000~~chr21:32600000-32625000,
chr21:31175000-31200000~~chr21:32575000-32600000,
chr21:31700000-31725000~~chr21:32600000-32625000,
chr21:31725000-31750000~~chr21:32575000-32600000,
chr21:31725000-31750000~~chr21:32600000-32625000,
chr21:31780232-31781825~~chr21:32599877-32601833,
chr21:31784993-31787270~~chr21:32596625-32598153,
chr21:31850000-31875000~~chr21:32575000-32600000,
chr21:31850000-31875000~~chr21:32600000-32625000,
chr21:31865248-31867144~~chr21:32598994-32601796,
chr21:31865272-31867342~~chr21:32599933-32601810,
chr21:31865442-31866981~~chr21:32599635-32601835,
chr21:31975000-32000000~~chr21:32600000-32625000,
chr21:32075000-32100000~~chr21:32600000-32625000,
chr21:32095976-32097575~~chr21:32599358-32601801,
chr21:32275000-32300000~~chr21:32575000-32600000,
chr21:32275000-32300000~~chr21:32600000-32625000,
chr21:32277555-32280325~~chr21:32599877-32601833,
chr21:32277665-32280330~~chr21:32599933-32601810,
chr21:32300000-32325000~~chr21:32575000-32600000,
chr21:32300000-32325000~~chr21:32600000-32625000,
chr21:32305431-32307333~~chr21:32600164-32601910,
chr21:32350000-32375000~~chr21:32600000-32625000,
chr21:32359189-32360657~~chr21:32599840-32601900,
chr21:32375000-32400000~~chr21:32575000-32600000,
chr21:32375000-32400000~~chr21:32600000-32625000,
chr21:32383323-32384788~~chr21:32600164-32601910,
chr21:32385843-32387035~~chr21:32599838-32601801,
chr21:32391754-32394231~~chr21:32599840-32601943,
chr21:32391823-32394318~~chr21:32599840-32601900,
chr21:32391849-32394127~~chr21:32599840-32601796,
chr21:32400000-32425000~~chr21:32575000-32600000,
chr21:32400000-32425000~~chr21:32600000-32625000,
chr21:32401983-32404518~~chr21:32600164-32601910,
chr21:32401987-32404521~~chr21:32599840-32601943,
chr21:32402041-32404495~~chr21:32599358-32601801,
chr21:32402043-32404526~~chr21:32599739-32601803,
chr21:32402099-32404537~~chr21:32599842-32601842,
chr21:32402110-32404433~~chr21:32599840-32601900,
chr21:32402112-32404476~~chr21:32599933-32601810,
chr21:32402135-32404476~~chr21:32598994-32601796,
chr21:32402183-32404544~~chr21:32600127-32601810,
chr21:32402211-32404532~~chr21:32599851-32601933,
chr21:32402220-32404493~~chr21:32600085-32601819,
chr21:32402351-32404483~~chr21:32599809-32601807,
chr21:32402421-32404494~~chr21:32599840-32601796,
chr21:32402474-32404277~~chr21:32599132-32601791,
chr21:32402478-32404275~~chr21:32599877-32601833,
chr21:32402531-32404281~~chr21:32600444-32601827,
chr21:32402537-32404397~~chr21:32599838-32601801,
chr21:32402544-32404481~~chr21:32599871-32601809,
chr21:32402553-32404518~~chr21:32599805-32601899,
chr21:32402562-32404219~~chr21:32600440-32601787,
chr21:32402573-32404309~~chr21:32599384-32601896,
chr21:32402578-32404394~~chr21:32599082-32601833,
chr21:32402579-32404271~~chr21:32600154-32601803,
chr21:32402590-32404484~~chr21:32599845-32601920,
chr21:32402599-32404105~~chr21:32599635-32601835,
chr21:32402611-32404103~~chr21:32600122-32601828,
chr21:32402633-32404158~~chr21:32600087-32601774,
chr21:32402649-32404059~~chr21:32600348-32601794,
chr21:32402698-32403972~~chr21:32600504-32601777,
chr21:32412413-32413787~~chr21:32599845-32601920,
chr21:32412745-32415761~~chr21:32598994-32601796,
chr21:32413259-32415823~~chr21:32599838-32601801,
chr21:32413356-32415861~~chr21:32599851-32601933,
chr21:32413407-32415950~~chr21:32599840-32601796,
chr21:32413601-32416113~~chr21:32599842-32601842,
chr21:32413701-32415963~~chr21:32599805-32601899,
chr21:32413909-32415933~~chr21:32599809-32601807,
chr21:32413950-32415829~~chr21:32600085-32601819,
chr21:32450000-32475000~~chr21:32575000-32600000,
chr21:32475000-32500000~~chr21:32575000-32600000,
chr21:32500000-32525000~~chr21:32600000-32625000,
chr21:32600000-32625000~~chr21:32725000-32750000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, 4DNFIATA1HD5, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, 4DNFIBN9K4V9, ENCSR852KQC, GSE103148, 4DNFI7H4II2V, 4DNFIZ4F74QR, ENCSR350NJV, 4DNFI9VXTBE2, 4DNFIWNNO89O, ENCSR668RDP, 4DNFIL5K3MA1, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFIJ5DQZVK, ENCSR658RQQ, ENCSR299VMZ, 4DNFISPUVQHA, GSE112000, 4DNFI8Y9SRP2, 4DNFIK61ILGM, GSE108869, GSE116872, 4DNFIAWVDQ8C, 4DNFI7XAZNNQ, ENCSR527RXH, GSE105028, ENCSR033GUP, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, GSE126792, ENCSR146FPM, 4DNFIOX3BGNE, 4DNFINW9P6XF, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, GSE52457, 4DNFIBT4EAKN, Direct, ENCSR314HAC, 4DNFIH9U4I7I, 4DNFIAS8LV1C, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9815EEJ, 4DNFIYJ4TWB8, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDZT7PR8, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIH2A7IKF, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIBRSIPE4, 4DNFI6CWNUFL, 4DNFI5CGQ46V, 4DNFIR8OU6QJ, 4DNFIE8E4ANZ, GSE120294, ENCSR672RHL, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIFHU75I5, 4DNFI15FPSQL, ENCSR444BAR, ENCSR123UVP, 4DNFIJBJ6QVH, 4DNFI3A3VYWU, 4DNFIM2BMJ33, GSE165038, 4DNFIALNLR78, 4DNFIBY3UHJB, ENCSR386KHY, ENCSR379CII, 4DNFIQRTP7NM, ENCSR393LOP, 4DNFI4TJTL7A, GSE125243, 4DNFIPAF4PYT, ENCSR404HWQ, 4DNFIE5TEYK7, 4DNFIJ8JKKWJ, 4DNFIDKJFK2S, ENCSR933UZH, GSE58752, GSE116869, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIILDWK8M, GSE111537, GSE131580, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, 4DNFIOUSETUP, 4DNFIXGXD67I, ENCSR128RPG, 4DNFISTWNV9C, 4DNFI1UEG1HD, GSE101921, 4DNFIQVMVRP6, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI5LCW273, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: U2OS,HL-60,SLK,P3HR-1
- Cohesin-DEGs, number of studies: 4
- Cohesin-DEGs, study: GSE140651,GSE131581,GSE138937,GSE89799
- Cohesin-DEGs, subunit: CTCF,SMC1,Rad21,SA2