Deatailed information for gene ENSG00000159128
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00010292
- Gene Symbol: IFNGR2
- Ensembl ID: ENSG00000159128
-
Gene locus: chr21:33403431-33437521
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs,
- Regulatory cohesin (double-evidenced):
chr21-32649686-32650031,
chr21-32652266-32654844,
chr21-32656100-32656468,
chr21-32658231-32658886,
chr21-32659615-32660147,
chr21-32660445-32661444,
chr21-32661750-32662259,
chr21-32668006-32668064,
chr21-32679338-32679541,
chr21-32682583-32683488,
chr21-32684885-32685224,
chr21-32687754-32688589,
chr21-32689285-32689714,
chr21-32692284-32692883,
chr21-32693837-32694604,
chr21-32695762-32696188,
chr21-32699032-32699397,
chr21-32726512-32729587,
chr21-32732552-32732879,
chr21-32824831-32828372,
chr21-32830402-32830634,
chr21-32831636-32833765,
chr21-32834854-32835342,
chr21-32836285-32836542,
chr21-32844499-32845578,
chr21-32846527-32846785,
chr21-32905563-32905679,
chr21-32907895-32908656,
chr21-32911935-32912474,
chr21-32916458-32917800,
chr21-32918143-32919135,
chr21-32920512-32922573,
chr21-32922883-32923153,
chr21-32926434-32926668,
chr21-32929569-32931312,
chr21-32931964-32933359,
chr21-32934017-32934551,
chr21-32938921-32942303,
chr21-32943893-32944726,
chr21-32948912-32949468,
chr21-32975475-32976221,
chr21-32976543-32977058,
chr21-32977580-32977963,
chr21-32978797-32979512,
chr21-32983065-32983400,
chr21-32986202-32986308,
chr21-32989013-32989362,
chr21-32990696-32991086,
chr21-32991381-32992043,
chr21-32992487-32996486,
chr21-32999540-32999696,
chr21-33018853-33032029,
chr21-33032493-33034874,
chr21-33035105-33037170,
chr21-33039667-33039909,
chr21-33040959-33041685,
chr21-33042060-33043831,
chr21-33046659-33047090,
chr21-33047338-33047839,
chr21-33049543-33050194,
chr21-33176533-33177231,
chr21-33178927-33179239,
chr21-33180031-33180867,
chr21-33181665-33182455,
chr21-33183559-33184328,
chr21-33185051-33185236,
chr21-33185475-33185847,
chr21-33186452-33186919,
chr21-33189336-33190586,
chr21-33191132-33191643,
chr21-33192567-33193025,
chr21-33193411-33193657,
chr21-33194152-33195061,
chr21-33195338-33206151,
chr21-33206645-33209519,
chr21-33209798-33210131,
chr21-33211272-33213452,
chr21-33215011-33217335,
chr21-33219732-33220309,
chr21-33222873-33223242,
chr21-33224686-33226597,
chr21-33227306-33234986,
chr21-33235935-33240451,
chr21-33241032-33241987,
chr21-33242428-33243401,
chr21-33243836-33246483,
chr21-33246774-33247187,
chr21-33247456-33248264,
chr21-33248634-33250562,
chr21-33322068-33327091,
chr21-33327900-33328437,
chr21-33328733-33329063,
chr21-33330820-33332435,
chr21-33332687-33333184,
chr21-33333599-33333915,
chr21-33334567-33335084,
chr21-33337603-33338145,
chr21-33338686-33340327,
chr21-33340630-33341347,
chr21-33341696-33343063,
chr21-33343933-33344156,
chr21-33346315-33351403,
chr21-33372144-33385560,
chr21-33395831-33399196,
chr21-33399401-33399800,
chr21-33400356-33408549,
chr21-33408842-33409547,
chr21-33409784-33417376,
chr21-33417627-33420477,
chr21-33420917-33421930,
chr21-33422693-33423726,
chr21-33423966-33426664,
chr21-33427110-33427633,
chr21-33428595-33430128,
chr21-33430846-33431848,
chr21-33432435-33436842,
chr21-33437463-33438154,
chr21-33438470-33439663,
chr21-33440299-33447453,
chr21-33499516-33501924,
chr21-33502300-33502577,
chr21-33503183-33503797,
chr21-33505850-33506477,
chr21-33510139-33511457,
chr21-33512032-33512236,
chr21-33512943-33513570,
chr21-33514224-33515002,
chr21-33519154-33519618,
chr21-33521344-33521870,
chr21-33523382-33523959,
chr21-33525904-33526454,
chr21-33527092-33527653,
chr21-33529525-33530162,
chr21-33532796-33533465,
chr21-33533755-33533994,
chr21-33534392-33534803,
chr21-33535665-33535965,
chr21-33538818-33539084,
chr21-33539455-33539677,
chr21-33540381-33546238,
chr21-33546540-33546789,
chr21-33547026-33547321,
chr21-33547807-33548397,
chr21-33548736-33549040,
chr21-33549851-33553567,
chr21-33555465-33555687,
chr21-33557350-33557775,
chr21-33559351-33559571,
chr21-33559859-33560148,
chr21-33562137-33563192,
chr21-33564641-33564857,
chr21-33569523-33570179,
chr21-33572330-33572767,
chr21-33873576-33876182,
chr21-33877070-33877376,
chr21-33877772-33878324,
chr21-33878528-33879672,
chr21-33879940-33881651,
chr21-33882293-33882835,
chr21-33883363-33885590,
chr21-33885973-33886683,
chr21-33887788-33889149,
chr21-33890890-33891210,
chr21-33892684-33896819,
chr21-33898105-33899425,
chr21-33899805-33900206,
chr21-34344734-34353465,
chr21-34355390-34355626,
chr21-34356201-34356732,
chr21-34360486-34364137,
chr21-34364518-34364800,
chr21-34365500-34365847,
chr21-34366487-34368638,
chr21-34369248-34369608,
chr21-34371955-34372730,
chr21-34373717-34374267,
chr21-34374742-34376256,
-
Co-expression with cohesin genes Rho = 0.3891
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.309
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.868
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,Keratinocytes192627,Olfactory,MCF-7,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,REC-1,OCI-AML-3,HCT-116,H1-hESC,HCC1599,Motor-Neuron,MSLCL,U-937,HUES64,SU-DHL-4,HUVEC,HL-60,RT-112,Skin-Fibroblast,CC-2551,HFF-hTERT,HAP1,MCF7-FASR,U251
- Related loop:
chr21:32650000-32675000~~chr21:33425000-33450000,
chr21:32675000-32700000~~chr21:33400000-33425000,
chr21:32725000-32750000~~chr21:33375000-33400000,
chr21:32825000-32850000~~chr21:33375000-33400000,
chr21:32825000-32850000~~chr21:33425000-33450000,
chr21:32900000-32925000~~chr21:33375000-33400000,
chr21:32900000-32925000~~chr21:33425000-33450000,
chr21:32925000-32950000~~chr21:33375000-33400000,
chr21:32925000-32950000~~chr21:33425000-33450000,
chr21:32975000-33000000~~chr21:33375000-33400000,
chr21:32975000-33000000~~chr21:33425000-33450000,
chr21:33025000-33050000~~chr21:33375000-33400000,
chr21:33025000-33050000~~chr21:33425000-33450000,
chr21:33175000-33200000~~chr21:33425000-33450000,
chr21:33199071-33200963~~chr21:33434105-33435828,
chr21:33200000-33225000~~chr21:33375000-33400000,
chr21:33200000-33225000~~chr21:33400000-33425000,
chr21:33200000-33225000~~chr21:33425000-33450000,
chr21:33214817-33217264~~chr21:33441565-33443170,
chr21:33225000-33250000~~chr21:33425000-33450000,
chr21:33325000-33350000~~chr21:33425000-33450000,
chr21:33375000-33400000~~chr21:33500000-33525000,
chr21:33375000-33400000~~chr21:33525000-33550000,
chr21:33375000-33400000~~chr21:33550000-33575000,
chr21:33375000-33400000~~chr21:33875000-33900000,
chr21:33375000-33400000~~chr21:34350000-34375000,
chr21:33379758-33381475~~chr21:33403296-33405146,
chr21:33382301-33384536~~chr21:33403209-33405252,
chr21:33382586-33383986~~chr21:33400382-33401843,
chr21:33400000-33425000~~chr21:41350000-41375000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
GSE95015, 4DNFITUOMFUQ, ENCSR794RDS, 4DNFIBN9K4V9, ENCSR852KQC, 4DNFIZ4F74QR, 4DNFI7H4II2V, ENCSR350NJV, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, 4DNFI9VXTBE2, 4DNFIL5K3MA1, GSE97394, 4DNFICEGAHRC, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, ENCSR658RQQ, 4DNFI6XD6JAQ, GSE112000, 4DNFIK61ILGM, GSE108869, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, 4DNFI7XAZNNQ, GSE105028, 4DNFIQWD8ZYD, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, 4DNFIOX3BGNE, GSE155380, 4DNFIJWBWE41, ENCSR587DSF, ENCSR452NHL, GSE80820, Direct, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFIFLJLIS5, 4DNFIDZT7PR8, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIWZEN3FF, 4DNFIR8OU6QJ, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIFHU75I5, 4DNFIYD8LO9Z, ENCSR123UVP, 4DNFIL9M97T2, ENCSR550JLK, 4DNFI3A3VYWU, 4DNFIJ7OAIFQ, GSE165038, 4DNFIALNLR78, 4DNFIEJEFCAM, ENCSR393LOP, GSE125243, 4DNFIJ8JKKWJ, 4DNFIDKJFK2S, ENCSR094EIC, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR866FWQ, 4DNFI6EIFUZI, 4DNFIP25GZGA, GSE111537, GSE131580, 4DNFIOUSETUP, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFI8JFOAJT, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFIP71EWXC, 4DNFIHN2QSMX, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: U2OS,MCF-10A,SLK,P3HR-1
- Cohesin-DEGs, number of studies: 7
- Cohesin-DEGs, study: GSE140651,GSE138937,GSE89799,GSE101921
- Cohesin-DEGs, subunit: CTCF,SMC1,Rad21,SA2