Deatailed information for gene ENSG00000159212
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00010311
- Gene Symbol: CLIC6
- Ensembl ID: ENSG00000159212
-
Gene locus: chr21:34668993-34718223
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
chr21-33675259-33675593,
chr21-33678520-33679233,
chr21-33681669-33681950,
chr21-33682198-33684451,
chr21-33684696-33686775,
chr21-33687051-33688043,
chr21-33688329-33690064,
chr21-33690301-33691242,
chr21-33692275-33692558,
chr21-33693364-33693628,
chr21-33695730-33696319,
chr21-34152624-34153131,
chr21-34153764-34154473,
chr21-34155219-34155571,
chr21-34156015-34159625,
chr21-34160487-34160828,
chr21-34161095-34161474,
chr21-34164924-34165158,
chr21-34166374-34166733,
chr21-34173455-34173728,
chr21-34640014-34641524,
chr21-34667709-34667963,
chr21-34668512-34671407,
chr21-34671789-34672763,
chr21-34675632-34675953,
chr21-34678012-34678345,
chr21-34679678-34680290,
chr21-34682805-34683058,
chr21-34686036-34686398,
chr21-34686620-34687085,
chr21-34687732-34691121,
chr21-34692147-34696282,
chr21-34697770-34698335,
chr21-34699934-34700500,
chr21-34701028-34701356,
chr21-34701621-34704879,
chr21-34705086-34705452,
chr21-34707476-34708390,
chr21-34710392-34710772,
chr21-34712749-34713096,
chr21-34715391-34715920,
chr21-34716204-34717951,
chr21-34718434-34718803,
chr21-34719317-34720422,
chr21-34720656-34720985,
chr21-34721618-34723787,
chr21-34774437-34775227,
chr21-34775844-34776126,
chr21-34780128-34780588,
chr21-34781697-34781958,
chr21-34782961-34783349,
chr21-34784579-34784863,
chr21-34785778-34786442,
chr21-34787208-34788094,
chr21-34788937-34789278,
chr21-34790774-34791027,
chr21-34791758-34793250,
chr21-34793532-34794048,
chr21-34794504-34797246,
chr21-34798224-34798713,
chr21-34799103-34799483,
chr21-34800219-34800622,
chr21-34800864-34803584,
chr21-34803861-34805114,
chr21-34806718-34810175,
chr21-34810714-34811564,
chr21-34812265-34817307,
chr21-34817535-34820582,
chr21-34821788-34822030,
chr21-34822893-34823796,
chr21-34826496-34828171,
chr21-34830533-34831199,
chr21-34832157-34832670,
chr21-34833081-34847342,
chr21-34847624-34848884,
chr21-34849980-34869247,
chr21-34870048-34873238,
chr21-34874329-34876263,
chr21-34876603-34893358,
chr21-34894062-34895143,
chr21-34895350-34895823,
chr21-34897971-34898224,
chr21-35025268-35030343,
chr21-35030618-35031406,
chr21-35034190-35035022,
chr21-35035550-35039035,
chr21-35039690-35041679,
chr21-35042107-35054875,
chr21-35374515-35378288,
chr21-35381568-35382502,
chr21-35385712-35386414,
chr21-35390026-35390708,
chr21-35392967-35393548,
chr21-35394657-35397476,
chr21-35397987-35402508,
chr21-35402763-35403675,
chr21-35403878-35404147,
chr21-35404397-35406208,
chr21-35407306-35409284,
chr21-35409547-35410796,
chr21-35411186-35412282,
chr21-35417009-35417597,
chr21-35420540-35421545,
chr21-35423373-35425369,
chr21-35449966-35450213,
chr21-35450543-35451023,
chr21-35460262-35460766,
chr21-35461442-35461996,
chr21-35467105-35468213,
chr21-35468570-35469988,
chr21-35470408-35470913,
chr21-35471422-35471879,
chr21-35472963-35473111,
chr21-35473456-35474136,
chr21-35474448-35479416,
chr21-35500853-35500970,
chr21-35503483-35504812,
chr21-35505097-35505408,
chr21-35505813-35513273,
chr21-35517685-35518236,
chr21-35520216-35522630,
chr21-35524410-35526641,
chr21-35573981-35576315,
chr21-35576556-35580249,
chr21-35580481-35581036,
chr21-35582951-35583183,
chr21-35583700-35584248,
chr21-35585360-35587069,
chr21-35589326-35589724,
chr21-35592466-35593947,
chr21-35597811-35598021,
chr21-35598644-35598993,
chr21-35600876-35601492,
chr21-35602765-35603978,
chr21-35604344-35604583,
chr21-35604798-35605091,
chr21-35606136-35607050,
chr21-35608993-35609625,
chr21-35611744-35612170,
chr21-35613404-35617826,
chr21-35618320-35620072,
chr21-35622116-35622255,
chr21-35622783-35623071,
chr21-35624757-35626689,
chr21-35648338-35649581,
chr21-35826438-35826754,
chr21-35829136-35829658,
chr21-35831642-35832191,
chr21-35833310-35833627,
chr21-35834021-35834863,
chr21-35835452-35836190,
chr21-35836412-35837584,
chr21-35837818-35843127,
chr21-35843830-35845505,
chr21-35849614-35851658,
chr21-35852978-35854102,
chr21-35855138-35855885,
chr21-35857491-35857818,
chr21-35861535-35862042,
chr21-35873964-35875028,
chr21-35924668-35926278,
chr21-35927378-35927659,
chr21-35931956-35934271,
chr21-35938558-35942713,
chr21-35946138-35946776,
chr21-35953385-35954030,
chr21-35955470-35955692,
chr21-35958505-35958939,
chr21-35963973-35964518,
chr21-35965837-35967157,
chr21-35968775-35968887,
chr21-35974854-35975595,
chr21-35976923-35977297,
chr21-35978480-35978702,
chr21-35981014-35981329,
chr21-35982812-35982917,
chr21-35983170-35983412,
chr21-35984558-35985494,
chr21-35986556-35987129,
chr21-35989141-35989875,
chr21-35991211-35992040,
chr21-35992735-35993291,
chr21-35994336-35994851,
chr21-36023653-36025675,
chr21-36026141-36034881,
chr21-36035088-36035988,
chr21-36037645-36037936,
chr21-36038529-36039078,
chr21-36039809-36040296,
chr21-36040874-36041598,
chr21-36044044-36044355,
chr21-36044664-36044983,
chr21-36045207-36046298,
chr21-36047110-36047488,
chr21-36048486-36048822,
chr21-36099272-36100281,
chr21-36103438-36103780,
chr21-36104103-36105761,
chr21-36108296-36108584,
chr21-36111138-36114564,
chr21-36117276-36118182,
chr21-36120265-36121169,
chr21-36122832-36123472,
-
Co-expression with cohesin genes Rho = 0.2065
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.749
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.878
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: TAMR-MCF7,MB157,DU145,K1,H1-Mesenchymal,Olfactory,MCF-7,HEK293T,GM12891,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,iPSC,Hep-G2,HT-1197,H1-hESC,HT-1376,Motor-Neuron,NaiveB,U-937,SU-DHL-4,HUVEC,RT-112,Jurkat,CC-2551,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:33675000-33700000~~chr21:34650000-34675000,
chr21:34150000-34175000~~chr21:34650000-34675000,
chr21:34640130-34641379~~chr21:34670339-34671972,
chr21:34650000-34675000~~chr21:35925000-35950000,
chr21:34675000-34700000~~chr21:34775000-34800000,
chr21:34675000-34700000~~chr21:34800000-34825000,
chr21:34675000-34700000~~chr21:34850000-34875000,
chr21:34675000-34700000~~chr21:34875000-34900000,
chr21:34675000-34700000~~chr21:35400000-35425000,
chr21:34675000-34700000~~chr21:35450000-35475000,
chr21:34675000-34700000~~chr21:35500000-35525000,
chr21:34675000-34700000~~chr21:35575000-35600000,
chr21:34675000-34700000~~chr21:35600000-35625000,
chr21:34675000-34700000~~chr21:35825000-35850000,
chr21:34675000-34700000~~chr21:35850000-35875000,
chr21:34675000-34700000~~chr21:35925000-35950000,
chr21:34675000-34700000~~chr21:35950000-35975000,
chr21:34675000-34700000~~chr21:36025000-36050000,
chr21:34675000-34700000~~chr21:36100000-36125000,
chr21:34692249-34694404~~chr21:35507719-35509586,
chr21:34692384-34694384~~chr21:35615361-35617172,
chr21:34692406-34694411~~chr21:35648041-35649435,
chr21:34692433-34694405~~chr21:35507807-35509535,
chr21:34692471-34694305~~chr21:35399887-35401439,
chr21:34692474-34694411~~chr21:35507809-35509924,
chr21:34692480-34694427~~chr21:35399614-35401619,
chr21:34692573-34694447~~chr21:35399848-35401817,
chr21:34692731-34694389~~chr21:35399881-35401571,
chr21:34700000-34725000~~chr21:34825000-34850000,
chr21:34700000-34725000~~chr21:34850000-34875000,
chr21:34700000-34725000~~chr21:35025000-35050000,
chr21:34700000-34725000~~chr21:35375000-35400000,
chr21:34700000-34725000~~chr21:35400000-35425000,
chr21:34700000-34725000~~chr21:35500000-35525000,
chr21:34700000-34725000~~chr21:35825000-35850000,
chr21:34700000-34725000~~chr21:35925000-35950000,
chr21:34700000-34725000~~chr21:35975000-36000000,
chr21:34700000-34725000~~chr21:36025000-36050000,
chr21:34718892-34720426~~chr21:35507719-35509586,
chr21:34722039-34723826~~chr21:35507813-35509465,
chr21:34722101-34723694~~chr21:35615336-35617186,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFI3CFMRID, ENCSR662QKG, 4DNFIWZEN3FF, ENCSR194SRI, GSE94872, 4DNFIDJ2JZ7Q, GSE118716, 4DNFIE8E4ANZ, ENCSR499RVD, GSE108787, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, GSE84022, ENCSR361AYD, ENCSR146FPM, ENCSR672RHL, 4DNFIOX3BGNE, 4DNFI7H4II2V, 4DNFIW8TIFI5, 4DNFIZ4F74QR, 4DNFIMEG1QIC, ENCSR866FWQ, 4DNFIBM714BP, 4DNFI9VXTBE2, 4DNFIYD8LO9Z, ENCSR668RDP, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFIV239W4L, ENCSR587DSF, 4DNFICEGAHRC, 4DNFIE8T8JZ8, ENCSR128RPG, GSE52457, 4DNFI3A3VYWU, ENCSR658RQQ, 4DNFIM2BMJ33, ENCSR299VMZ, ENCSR314HAC, Direct, 4DNFISPUVQHA, 4DNFIX7H3CE2, GSE165038, ENCSR386KHY, ENCSR244BBG, ENCSR393LOP, GSE44267, 4DNFIOCW5AEM, 4DNFIPAF4PYT, 4DNFIQVMVRP6, 4DNFI5LCW273, 4DNFIVJ3IIQL, ENCSR933UZH, 4DNFIFLJLIS5, 4DNFIDBIEXI7, GSE105028, 4DNFIBKZK63V, GSE116869, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence: K-562
- Cohesin-DEGs, number of studies: 2
- Cohesin-DEGs, study: GSE131448
- Cohesin-DEGs, subunit: SA2