Deatailed information for gene ENSG00000159228
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00010316
- Gene Symbol: CBR1
- Ensembl ID: ENSG00000159228
- Gene locus: chr21:36069940-36073166 Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs
- Regulatory cohesin (double-evidenced): chr21-34330025-34330426, chr21-34332972-34333971, chr21-34334498-34338506, chr21-34339763-34340385, chr21-34340726-34341087, chr21-34341939-34344393, chr21-34344734-34353465, chr21-34355390-34355626, chr21-34356201-34356732, chr21-34360486-34364137, chr21-34364518-34364800, chr21-34365500-34365847, chr21-34366487-34368638, chr21-34369248-34369608, chr21-34371955-34372730, chr21-34373717-34374267, chr21-34374742-34376256, chr21-35953385-35954030, chr21-35955470-35955692, chr21-35958505-35958939, chr21-35963973-35964518, chr21-35965837-35967157, chr21-35968775-35968887, chr21-35974854-35975595, chr21-36064608-36066514, chr21-36069428-36070759, chr21-36071001-36071885, chr21-36072481-36072892, chr21-36073158-36073998, chr21-36076454-36076702, chr21-36076908-36077195, chr21-36077435-36078090, chr21-36111138-36114564, chr21-36175175-36175489, chr21-36175944-36176604, chr21-36176844-36177305, chr21-36178285-36178970, chr21-36180358-36184886, chr21-36185489-36190732, chr21-36191345-36191818, chr21-36192532-36196146, chr21-36196672-36199361, chr21-36199941-36200843, chr21-36201956-36204277, chr21-36204496-36205970, chr21-36207279-36213059, chr21-36213261-36213784, chr21-36215461-36216010, chr21-36220646-36222170, chr21-36224193-36224492,
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Co-expression with cohesin genes Rho = 0.2197
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information) - Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.281
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60 -
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.854
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90 - Whether has cohesin-loop: True
- Involved cell types for loop evidence: MCF-7,HCT-116,GM12878,Hep-G2,K-562,H1-hESC,HFF-hTERT,HAP1,HeLa-S3
- Related loop: chr21:34325000-34350000~~chr21:36075000-36100000, chr21:34350000-34375000~~chr21:36050000-36075000, chr21:34350000-34375000~~chr21:36075000-36100000, chr21:35950000-35975000~~chr21:36075000-36100000, chr21:36050000-36075000~~chr21:36200000-36225000, chr21:36069440-36070708~~chr21:36112102-36113990, chr21:36075000-36100000~~chr21:36175000-36200000, chr21:36075000-36100000~~chr21:38250000-38275000,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
Tools:
- Assay
