Deatailed information for gene ENSG00000159263
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00010325
- Gene Symbol: SIM2
- Ensembl ID: ENSG00000159263
-
Gene locus: chr21:36699114-36749917
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs
- Regulatory cohesin (double-evidenced):
chr21-34874329-34876263,
chr21-34876603-34893358,
chr21-34894062-34895143,
chr21-34895350-34895823,
chr21-34897971-34898224,
chr21-36125038-36126944,
chr21-36127229-36128557,
chr21-36128832-36129080,
chr21-36129740-36130699,
chr21-36132348-36133044,
chr21-36133297-36137447,
chr21-36138179-36138394,
chr21-36139440-36143477,
chr21-36143694-36144806,
chr21-36145249-36145917,
chr21-36146214-36147498,
chr21-36148387-36148829,
chr21-36149046-36149389,
chr21-36149733-36151341,
chr21-36399798-36400258,
chr21-36400631-36402974,
chr21-36403437-36403958,
chr21-36404207-36404954,
chr21-36408129-36408499,
chr21-36411169-36411609,
chr21-36412195-36412659,
chr21-36413976-36414306,
chr21-36414631-36414945,
chr21-36415497-36416503,
chr21-36417281-36424270,
chr21-36424574-36425739,
chr21-36474757-36475796,
chr21-36476076-36480937,
chr21-36481528-36482476,
chr21-36483058-36483708,
chr21-36483929-36485032,
chr21-36486009-36487326,
chr21-36487671-36488711,
chr21-36489121-36491769,
chr21-36492034-36493309,
chr21-36493632-36494257,
chr21-36494558-36495295,
chr21-36496719-36498324,
chr21-36499698-36502459,
chr21-36502665-36508046,
chr21-36508508-36509460,
chr21-36509687-36510756,
chr21-36511314-36511916,
chr21-36512825-36514000,
chr21-36514562-36514704,
chr21-36514932-36516116,
chr21-36516886-36517136,
chr21-36518707-36520114,
chr21-36522371-36522616,
chr21-36522943-36523216,
chr21-36523577-36525374,
chr21-36575350-36575709,
chr21-36576412-36577230,
chr21-36583668-36584068,
chr21-36584895-36585487,
chr21-36585745-36586353,
chr21-36587320-36592079,
chr21-36592299-36593515,
chr21-36594289-36594685,
chr21-36597896-36598145,
chr21-36626499-36626785,
chr21-36627115-36627703,
chr21-36628239-36628880,
chr21-36629116-36633556,
chr21-36635100-36635760,
chr21-36639730-36643030,
chr21-36643874-36644319,
chr21-36645284-36645814,
chr21-36646243-36646978,
chr21-36647229-36648099,
chr21-36649972-36650268,
chr21-36694356-36695251,
chr21-36695763-36711052,
chr21-36713788-36714054,
chr21-36717947-36720220,
chr21-36722587-36724224,
chr21-36725682-36726362,
chr21-36726679-36728980,
chr21-36729274-36729976,
chr21-36730326-36734196,
chr21-36734513-36736672,
chr21-36737205-36737911,
chr21-36738247-36739054,
chr21-36739692-36739898,
chr21-36740699-36741157,
chr21-36741431-36742277,
chr21-36742878-36743515,
chr21-36744439-36745359,
chr21-36745702-36746410,
chr21-36747059-36748690,
chr21-36749881-36750694,
chr21-36751351-36751846,
chr21-36752882-36754752,
chr21-36849359-36851035,
chr21-36852281-36852846,
chr21-36853092-36853523,
chr21-36853815-36855525,
chr21-36858096-36861901,
chr21-36863188-36863633,
chr21-36868703-36869527,
chr21-36873092-36873862,
chr21-36874166-36876283,
chr21-36900452-36900638,
chr21-36902278-36903030,
chr21-36906879-36907037,
chr21-36908112-36912037,
chr21-36912728-36913168,
chr21-36913831-36916029,
chr21-36916572-36919027,
chr21-36921025-36921843,
chr21-36922598-36923152,
chr21-36924393-36924624,
chr21-36925188-36930260,
chr21-36931558-36932127,
chr21-36932869-36933269,
chr21-36933777-36933972,
chr21-36936430-36937373,
chr21-36938461-36938855,
chr21-36939198-36940146,
chr21-36940753-36941319,
chr21-36941642-36942402,
chr21-36945889-36946126,
chr21-36946840-36947402,
chr21-36947671-36947946,
chr21-36949217-36949518,
chr21-37052914-37053240,
chr21-37055442-37055918,
chr21-37057230-37057964,
chr21-37058503-37058789,
chr21-37059694-37061303,
chr21-37061566-37062938,
chr21-37063355-37065228,
chr21-37066951-37067057,
chr21-37070631-37076219,
-
Co-expression with cohesin genes Rho = 0.1636
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.720
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.861
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,TAMR-MCF7,DU145,Olfactory,Hepatocyte-H9,GM19239,MCF-7,GM12891,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,H9-hESC,NCI-H1437,iPSC,ARPE-19,Hep-G2,H1-hESC,HT-1376,BMEC,HUES64,HUVEC,NPC-H9,RT-112,Skin-Fibroblast,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:33025000-33050000~~chr21:36675000-36700000,
chr21:33025000-33050000~~chr21:36700000-36725000,
chr21:34875000-34900000~~chr21:36675000-36700000,
chr21:36125000-36150000~~chr21:36675000-36700000,
chr21:36400000-36425000~~chr21:36675000-36700000,
chr21:36400000-36425000~~chr21:36700000-36725000,
chr21:36475000-36500000~~chr21:36725000-36750000,
chr21:36500000-36525000~~chr21:36675000-36700000,
chr21:36500000-36525000~~chr21:36725000-36750000,
chr21:36575000-36600000~~chr21:36675000-36700000,
chr21:36575000-36600000~~chr21:36725000-36750000,
chr21:36625000-36650000~~chr21:36725000-36750000,
chr21:36675000-36700000~~chr21:36900000-36925000,
chr21:36675000-36700000~~chr21:36925000-36950000,
chr21:36700000-36725000~~chr21:36850000-36875000,
chr21:36700000-36725000~~chr21:36900000-36925000,
chr21:36700000-36725000~~chr21:36925000-36950000,
chr21:36725000-36750000~~chr21:36900000-36925000,
chr21:36725000-36750000~~chr21:36925000-36950000,
chr21:36725000-36750000~~chr21:37050000-37075000,
chr21:36727406-36729008~~chr21:36853567-36855599,
chr21:36746594-36748679~~chr21:36926513-36928814,
chr21:36746609-36749083~~chr21:36853704-36855509,
chr21:36746609-36749083~~chr21:36916830-36918749,
chr21:36746609-36749083~~chr21:36926698-36929094,
chr21:36746645-36749017~~chr21:36926642-36928684,
chr21:36746707-36748632~~chr21:36917076-36918400,
chr21:36746841-36748820~~chr21:36853768-36855574,
chr21:36746841-36748820~~chr21:36926678-36929090,
chr21:36746942-36748770~~chr21:36853698-36855512,
chr21:36746942-36748770~~chr21:36916749-36918779,
chr21:36746944-36749154~~chr21:36916612-36918723,
chr21:36746944-36749154~~chr21:36926687-36928814,
chr21:36746957-36749111~~chr21:36916838-36918727,
chr21:36746964-36748885~~chr21:36853704-36855614,
chr21:36746970-36748653~~chr21:36853694-36855322,
chr21:36747017-36748924~~chr21:36926717-36928685,
chr21:36747198-36748728~~chr21:36926753-36928677,
chr21:36747249-36749170~~chr21:36926465-36928856,
chr21:36747295-36748582~~chr21:36926942-36928578,
chr21:36750000-36775000~~chr21:36850000-36875000,
chr21:36750000-36775000~~chr21:36900000-36925000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIIFBC8WN, ENCSR662QKG, ENCSR194SRI, 4DNFI6CWNUFL, GSE94872, 4DNFIDJ2JZ7Q, 4DNFIMROE6N4, GSE118716, ENCSR499RVD, 4DNFI5SUHCGZ, GSE120294, ENCSR146FPM, ENCSR672RHL, 4DNFIEYQ5ZIR, ENCSR732QOH, 4DNFI6EIFUZI, 4DNFIA6NSSBJ, 4DNFIREVU1Z5, ENCSR668RDP, ENCSR381DCY, GSE155380, 4DNFICSTCJQZ, ENCSR981FNA, GSE97394, ENCSR587DSF, 4DNFICEGAHRC, 4DNFIIMZB6Y9, 4DNFIOUSETUP, 4DNFISTWNV9C, 4DNFIBT4EAKN, ENCSR507AHE, ENCSR299VMZ, Direct, ENCSR479MTN, 4DNFIALNLR78, 4DNFIAS8LV1C, 4DNFISPUVQHA, 4DNFIYIAUEPW, 4DNFIEJEFCAM, ENCSR244BBG, ENCSR393LOP, 4DNFI9815EEJ, 4DNFIAWVDQ8C, 4DNFIC3HAU11, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI5LCW273, ENCSR933UZH, ENCSR833CMG, 4DNFIDZT7PR8, 4DNFIFLJLIS5, GSE105028, 4DNFIHN2QSMX, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: MCF-7,HeLa,HCT116-mAID
- Cohesin-DEGs, number of studies: 4
- Cohesin-DEGs, study: GSE71420,GSE106886,GSE177045
- Cohesin-DEGs, subunit: Rad21