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Basic information

CohesinDB ID: CDBG00010425

Gene Symbol: TFF3

Ensembl ID: ENSG00000160180

Gene locus: chr21:42311666-42315651 Strand: -

Gene type: protein_coding

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1815 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.890
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: TAMR-MCF7,DU145,GM12892,K1,hTERT-HME1,Hepatocyte-H9,GM19239,MCF-7,GM12891,GM12878,K-562,Naive-hESC,A-549,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,NCI-H1437,Hep-G2,Kelly,H1-hESC,HCC1599,GM19238,Motor-Neuron,MSLCL,HUES64,SU-DHL-4,HUVEC,NPC-H9,RT-112,CC-2551,HFF-hTERT,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: ENCSR662QKG, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIBRSIPE4, 4DNFI5CGQ46V, 4DNFIDJ2JZ7Q, GSE118716, 4DNFIE8E4ANZ, ENCSR499RVD, ENCSR794RDS, GSE108787, GSE120294, GSE126792, ENCSR672RHL, ENCSR146FPM, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIBM714BP, 4DNFIREVU1Z5, GSE69643, GSE99541, ENCSR668RDP, ENCSR381DCY, GSE155380, 4DNFICSTCJQZ, ENCSR981FNA, GSE97394, ENCSR587DSF, ENCSR752QCX, ENCSR452NHL, 4DNFICEGAHRC, 4DNFIE8T8JZ8, ENCSR128RPG, 4DNFIOUSETUP, 4DNFIBT4EAKN, 4DNFISTWNV9C, ENCSR550JLK, GSE80820, 4DNFIJ7OAIFQ, ENCSR658RQQ, 4DNFIM2BMJ33, 4DNFIX4PJKXZ, ENCSR299VMZ, ENCSR314HAC, ENCSR479MTN, Direct, 4DNFI6XD6JAQ, 4DNFIAS8LV1C, 4DNFIBY3UHJB, 4DNFI1UEG1HD, 4DNFISPUVQHA, 4DNFII84FBKM, GSE116872, ENCSR244BBG, 4DNFI8JFOAJT, ENCSR393LOP, ENCSR991JXX, 4DNFIAWVDQ8C, 4DNFIOCW5AEM, ENCSR255XYX, ENCSR000FDB, ENCSR247RGI, ENCSR338WUS, 4DNFI9ZWZ5BS, 4DNFIE5TEYK7, ENCSR527RXH, 4DNFIDKJFK2S, ENCSR833CMG, 4DNFIZGCA8AH, GSE105028, 4DNFIHN2QSMX, ENCSR033GUP

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000160180