Deatailed information for gene ENSG00000160190
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00010431
- Gene Symbol: SLC37A1
- Ensembl ID: ENSG00000160190
-
Gene locus: chr21:42499631-42581440
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs,
- Regulatory cohesin (double-evidenced):
chr21-41200720-41201085,
chr21-41203279-41204508,
chr21-41207311-41209537,
chr21-41213457-41213771,
chr21-41214800-41215219,
chr21-41216467-41217270,
chr21-41217596-41218016,
chr21-41218863-41219208,
chr21-41219451-41220069,
chr21-41221113-41223031,
chr21-41223341-41223563,
chr21-41224862-41225153,
chr21-41649662-41650037,
chr21-41650707-41652356,
chr21-41653070-41654701,
chr21-41656820-41657981,
chr21-41658412-41661789,
chr21-41662180-41667516,
chr21-41667934-41670919,
chr21-41671179-41674646,
chr21-41698776-41700406,
chr21-41701336-41702512,
chr21-41703830-41708250,
chr21-41710305-41711418,
chr21-41711706-41713056,
chr21-41713475-41714677,
chr21-41715027-41718311,
chr21-41719102-41720033,
chr21-41720825-41721220,
chr21-41721582-41723534,
chr21-41724219-41724820,
chr21-41799784-41800050,
chr21-41800258-41800436,
chr21-41800941-41801669,
chr21-41801918-41803799,
chr21-41804360-41804854,
chr21-41805059-41805238,
chr21-41805853-41806997,
chr21-41807830-41808572,
chr21-41808928-41810866,
chr21-41811647-41812381,
chr21-41812630-41814016,
chr21-41814372-41823630,
chr21-41823944-41825655,
chr21-41898621-41901470,
chr21-41903610-41904218,
chr21-41905344-41905910,
chr21-41907516-41908154,
chr21-41908433-41908738,
chr21-41912525-41913615,
chr21-41913829-41916045,
chr21-41916566-41919291,
chr21-41919607-41924881,
chr21-41950243-41951395,
chr21-41951919-41960803,
chr21-41961161-41962054,
chr21-41962297-41963236,
chr21-41964196-41969097,
chr21-41970716-41971987,
chr21-41972592-41976832,
chr21-42047213-42050893,
chr21-42051580-42052235,
chr21-42053659-42066910,
chr21-42067521-42069314,
chr21-42069730-42069902,
chr21-42071020-42072208,
chr21-42072432-42077357,
chr21-42103416-42126825,
chr21-42127155-42127810,
chr21-42128488-42129619,
chr21-42130648-42131154,
chr21-42133171-42133790,
chr21-42135118-42136218,
chr21-42136531-42136713,
chr21-42136966-42138370,
chr21-42139645-42142559,
chr21-42143139-42149312,
chr21-42149675-42151617,
chr21-42152798-42155831,
chr21-42156081-42158150,
chr21-42158837-42159271,
chr21-42159533-42167922,
chr21-42168175-42168574,
chr21-42169121-42169273,
chr21-42171081-42172120,
chr21-42172666-42173562,
chr21-42173962-42174405,
chr21-42227795-42229175,
chr21-42230678-42231156,
chr21-42231900-42241298,
chr21-42242225-42243536,
chr21-42243826-42244231,
chr21-42244704-42245167,
chr21-42245409-42246173,
chr21-42247763-42247993,
chr21-42248295-42251114,
chr21-42299343-42300483,
chr21-42300983-42302568,
chr21-42302945-42303453,
chr21-42304539-42307451,
chr21-42307683-42313987,
chr21-42314400-42316186,
chr21-42316662-42318793,
chr21-42319099-42320523,
chr21-42320786-42322135,
chr21-42379075-42386730,
chr21-42400535-42400843,
chr21-42401248-42401553,
chr21-42403523-42404340,
chr21-42405157-42405336,
chr21-42405775-42406562,
chr21-42410755-42412796,
chr21-42413040-42414011,
chr21-42414328-42417910,
chr21-42418387-42418668,
chr21-42422915-42428748,
chr21-42429069-42429373,
chr21-42429892-42431565,
chr21-42432008-42432290,
chr21-42433805-42434474,
chr21-42434904-42435230,
chr21-42436840-42441137,
chr21-42442018-42442307,
chr21-42443007-42454584,
chr21-42455140-42456124,
chr21-42456477-42457076,
chr21-42458157-42458442,
chr21-42459111-42459310,
chr21-42459712-42463192,
chr21-42463767-42464707,
chr21-42464964-42468175,
chr21-42468693-42469817,
chr21-42470571-42470719,
chr21-42471137-42471564,
chr21-42471844-42472360,
chr21-42473167-42473467,
chr21-42473712-42475050,
chr21-42475275-42477409,
chr21-42478322-42479169,
chr21-42480568-42481138,
chr21-42482081-42482692,
chr21-42485826-42486174,
chr21-42486445-42487207,
chr21-42488988-42489705,
chr21-42494711-42497356,
chr21-42499096-42500557,
chr21-42501424-42501674,
chr21-42502080-42502217,
chr21-42502708-42504189,
chr21-42504444-42505658,
chr21-42508152-42508427,
chr21-42509210-42509582,
chr21-42512399-42517747,
chr21-42517993-42518929,
chr21-42520617-42521491,
chr21-42521907-42522162,
chr21-42522739-42523588,
chr21-42524067-42525788,
chr21-42526135-42528623,
chr21-42528891-42529866,
chr21-42530287-42531423,
chr21-42532164-42534148,
chr21-42534381-42538581,
chr21-42538854-42540670,
chr21-42540899-42541525,
chr21-42542597-42549588,
chr21-42550666-42551166,
chr21-42552612-42552929,
chr21-42553370-42553876,
chr21-42554156-42554862,
chr21-42555716-42557745,
chr21-42557991-42563561,
chr21-42563869-42567471,
chr21-42567836-42568107,
chr21-42568338-42571365,
chr21-42571820-42572304,
chr21-42572767-42573421,
chr21-42574597-42575565,
chr21-42576721-42576991,
chr21-42578056-42578346,
chr21-42578723-42581320,
chr21-42581763-42582576,
chr21-42583402-42584657,
chr21-42586456-42597158,
chr21-42597733-42599089,
chr21-42599440-42600439,
chr21-42676262-42677139,
chr21-42677464-42680918,
chr21-42681246-42681895,
chr21-42682647-42686811,
chr21-42687678-42689455,
chr21-42689874-42691124,
chr21-42692085-42693894,
chr21-42694195-42694540,
chr21-42695409-42697261,
chr21-42697642-42697964,
chr21-42698273-42698662,
chr21-42699236-42699751,
chr21-42702991-42704847,
chr21-42705334-42706618,
chr21-42707172-42707738,
chr21-42708001-42708873,
chr21-42711194-42712193,
chr21-42714071-42714371,
chr21-42715268-42715937,
chr21-42719553-42721821,
chr21-42722042-42725763,
chr21-42730966-42735509,
chr21-42735915-42736171,
chr21-42736532-42737441,
chr21-42737823-42739971,
chr21-42741003-42741674,
chr21-42742668-42742887,
chr21-42743465-42748459,
chr21-42749267-42749616,
chr21-42749851-42750087,
chr21-42750791-42751500,
chr21-42751805-42752432,
chr21-42753545-42754647,
chr21-42755098-42758193,
chr21-42758449-42764685,
chr21-42764938-42765068,
chr21-42765386-42766176,
chr21-42766664-42772453,
chr21-42772703-42773259,
chr21-42773602-42774406,
chr21-42774814-42776288,
chr21-42776828-42779070,
chr21-42779308-42780010,
chr21-42780698-42782627,
chr21-42782976-42784673,
chr21-42784971-42786842,
chr21-42787122-42787668,
chr21-42790449-42793799,
chr21-42794079-42794902,
chr21-42796065-42797183,
chr21-42799515-42801184,
chr21-42801570-42802027,
chr21-42804198-42804619,
chr21-42806323-42807117,
chr21-42807469-42808220,
chr21-42809607-42810029,
chr21-42810534-42811625,
chr21-42812043-42812143,
chr21-42812479-42812787,
chr21-42815294-42815581,
chr21-42816699-42821466,
chr21-42826351-42826612,
chr21-42828509-42829093,
chr21-42829440-42829756,
chr21-42830113-42831772,
chr21-42832131-42835353,
chr21-42836729-42839000,
chr21-42839290-42843405,
chr21-42844462-42845085,
chr21-42845314-42846984,
chr21-42847259-42856312,
chr21-42856928-42857550,
chr21-42858264-42858922,
chr21-42859132-42861293,
chr21-42861653-42864957,
chr21-42865222-42866633,
chr21-42867885-42870709,
chr21-42872006-42873778,
chr21-42955236-42958765,
chr21-42959015-42959246,
chr21-42959459-42961198,
chr21-42961474-42961813,
chr21-42962403-42962646,
chr21-42963590-42964529,
chr21-42965885-42969571,
chr21-42970561-42971027,
chr21-42971699-42976556,
chr21-43000878-43004167,
chr21-43005014-43005958,
chr21-43006547-43007242,
chr21-43007563-43008111,
chr21-43008975-43009699,
chr21-43011079-43011547,
chr21-43012278-43013148,
chr21-43016030-43017256,
chr21-43018084-43019388,
chr21-43020175-43023005,
chr21-43023655-43024103,
chr21-43024487-43026869,
chr21-43099852-43100255,
chr21-43104309-43104688,
chr21-43106709-43112150,
chr21-43112950-43113541,
chr21-43115966-43118415,
chr21-43167531-43179410,
chr21-43179782-43180289,
chr21-43180997-43181922,
chr21-43186619-43189146,
chr21-43189488-43189736,
chr21-43190641-43195980,
chr21-43196363-43198075,
chr21-43262337-43262934,
chr21-43263265-43265021,
chr21-43265406-43280154,
chr21-43296982-43309547,
chr21-43311036-43327583,
chr21-43574497-43576116,
chr21-43576516-43576782,
chr21-43578473-43579527,
chr21-43581013-43581404,
chr21-43581641-43582576,
chr21-43582859-43583337,
chr21-43583553-43584232,
chr21-43584938-43588325,
chr21-43589018-43591020,
chr21-43591407-43592525,
chr21-43592960-43594483,
chr21-43595004-43602071,
chr21-43602287-43614768,
chr21-43616172-43617037,
chr21-43618660-43619178,
chr21-43619389-43620762,
chr21-43621197-43621495,
chr21-43624303-43624805,
chr21-43626450-43626836,
chr21-43627385-43627862,
chr21-43631250-43632687,
chr21-43634076-43634294,
chr21-43634658-43635007,
chr21-43635772-43636021,
chr21-43636596-43637015,
chr21-43638930-43640728,
chr21-43640994-43641471,
chr21-43642814-43643056,
chr21-43643270-43649915,
chr21-44244978-44251442,
chr21-44251673-44252226,
chr21-44252559-44252895,
chr21-44253503-44259739,
chr21-44260974-44262029,
chr21-44262549-44268928,
chr21-44270131-44273478,
chr21-44273834-44274503,
chr21-44274897-44275317,
chr21-44320741-44336654,
chr21-44337821-44343795,
chr21-44344069-44346159,
chr21-44347920-44356379,
-
Co-expression with cohesin genes Rho = 0.2735
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.382
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.856
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,Keratinocytes192627,Spleen,H1-Mesenchymal,H1-Mesendoderm,Hepatocyte-H9,MCF-7,HEK293T,GM12891,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,HeLa-S3,H1-Trophectoderm,SU-DHL-2,H9-hESC,NCI-H1437,Liver,REC-1,HCT-116,Germinal-Center-B,HT-1197,H1-hESC,HCC1599,HT-1376,Motor-Neuron,MSLCL,BMEC,HUES64,SU-DHL-4,HUVEC,HL-60,RT-112,Jurkat,CyT49-Gut,CC-2551,HAP1,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:41200000-41225000~~chr21:42475000-42500000,
chr21:41650000-41675000~~chr21:42475000-42500000,
chr21:41700000-41725000~~chr21:42475000-42500000,
chr21:41800000-41825000~~chr21:42475000-42500000,
chr21:41800000-41825000~~chr21:42500000-42525000,
chr21:41900000-41925000~~chr21:42475000-42500000,
chr21:41950000-41975000~~chr21:42475000-42500000,
chr21:42050000-42075000~~chr21:42525000-42550000,
chr21:42125000-42150000~~chr21:42475000-42500000,
chr21:42125000-42150000~~chr21:42525000-42550000,
chr21:42125000-42150000~~chr21:42550000-42575000,
chr21:42125000-42150000~~chr21:42575000-42600000,
chr21:42144416-42146844~~chr21:42536796-42538220,
chr21:42144666-42146603~~chr21:42536570-42538455,
chr21:42144798-42146688~~chr21:42537025-42538186,
chr21:42150000-42175000~~chr21:42525000-42550000,
chr21:42150000-42175000~~chr21:42550000-42575000,
chr21:42150000-42175000~~chr21:42575000-42600000,
chr21:42225000-42250000~~chr21:42525000-42550000,
chr21:42300000-42325000~~chr21:42500000-42525000,
chr21:42300000-42325000~~chr21:42525000-42550000,
chr21:42300000-42325000~~chr21:42550000-42575000,
chr21:42300000-42325000~~chr21:42575000-42600000,
chr21:42308453-42310909~~chr21:42536570-42538455,
chr21:42308950-42311048~~chr21:42574252-42575417,
chr21:42379115-42382711~~chr21:42536098-42538505,
chr21:42380494-42382722~~chr21:42535556-42538484,
chr21:42400000-42425000~~chr21:42500000-42525000,
chr21:42425000-42450000~~chr21:42525000-42550000,
chr21:42450000-42475000~~chr21:42550000-42575000,
chr21:42454707-42456121~~chr21:42535463-42538505,
chr21:42454756-42455941~~chr21:42536154-42538496,
chr21:42466723-42468288~~chr21:42517954-42519108,
chr21:42466723-42468288~~chr21:42536785-42538249,
chr21:42466738-42468349~~chr21:42512702-42515312,
chr21:42466738-42468349~~chr21:42536098-42538505,
chr21:42466750-42468364~~chr21:42534380-42538530,
chr21:42466752-42469410~~chr21:42536796-42538220,
chr21:42466778-42468284~~chr21:42536154-42538496,
chr21:42466880-42468218~~chr21:42535463-42538505,
chr21:42473977-42475276~~chr21:42512630-42515252,
chr21:42475000-42500000~~chr21:42575000-42600000,
chr21:42475000-42500000~~chr21:43250000-43275000,
chr21:42475000-42500000~~chr21:43300000-43325000,
chr21:42519968-42521824~~chr21:42536722-42538497,
chr21:42525000-42550000~~chr21:42800000-42825000,
chr21:42525000-42550000~~chr21:43575000-43600000,
chr21:42525000-42550000~~chr21:44250000-44275000,
chr21:42525000-42550000~~chr21:44325000-44350000,
chr21:42539061-42541105~~chr21:42574098-42575530,
chr21:42539061-42541105~~chr21:42817512-42819474,
chr21:42539112-42541216~~chr21:42573882-42575738,
chr21:42539124-42540976~~chr21:42574171-42575456,
chr21:42539601-42540779~~chr21:42817608-42819476,
chr21:42550000-42575000~~chr21:42675000-42700000,
chr21:42550000-42575000~~chr21:42800000-42825000,
chr21:42550000-42575000~~chr21:43000000-43025000,
chr21:42550000-42575000~~chr21:43175000-43200000,
chr21:42575000-42600000~~chr21:42675000-42700000,
chr21:42575000-42600000~~chr21:42700000-42725000,
chr21:42575000-42600000~~chr21:42725000-42750000,
chr21:42575000-42600000~~chr21:42750000-42775000,
chr21:42575000-42600000~~chr21:42775000-42800000,
chr21:42575000-42600000~~chr21:42800000-42825000,
chr21:42575000-42600000~~chr21:42825000-42850000,
chr21:42575000-42600000~~chr21:42850000-42875000,
chr21:42575000-42600000~~chr21:42950000-42975000,
chr21:42575000-42600000~~chr21:43000000-43025000,
chr21:42575000-42600000~~chr21:43100000-43125000,
chr21:42575000-42600000~~chr21:43175000-43200000,
chr21:42575000-42600000~~chr21:43300000-43325000,
chr21:42575000-42600000~~chr21:43575000-43600000,
chr21:42575000-42600000~~chr21:43600000-43625000,
chr21:42575000-42600000~~chr21:43625000-43650000,
chr21:6425000-6450000~~chr21:42525000-42550000,
chr21:6425000-6450000~~chr21:42575000-42600000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, GSE43070, 4DNFIDJ2JZ7Q, ENCSR794RDS, 4DNFIBN9K4V9, ENCSR852KQC, ENCSR361AYD, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIA6NSSBJ, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, ENCSR658RQQ, ENCSR299VMZ, 4DNFI6XD6JAQ, 4DNFISPUVQHA, GSE116872, ENCSR305RTT, ENCSR000FDB, GSE105028, ENCSR833CMG, GSE87112, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, 4DNFIB7QTIMH, 4DNFIBXWIH8J, GSE155380, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, GSE52457, Direct, 4DNFIXWCLD4M, 4DNFIAS8LV1C, ENCSR244BBG, 4DNFI9815EEJ, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIDBIEXI7, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIWZEN3FF, 4DNFIE8E4ANZ, GSE120294, GSE84022, 4DNFIW8TIFI5, 4DNFIMEG1QIC, 4DNFIBM714BP, ENCSR123UVP, 4DNFIL9M97T2, ENCSR550JLK, 4DNFI3A3VYWU, 4DNFIJ7OAIFQ, 4DNFIM2BMJ33, 4DNFIBY3UHJB, ENCSR386KHY, 4DNFIQRTP7NM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, 4DNFIE5TEYK7, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, GSE58752, ENCSR507AHE, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, 4DNFII6AN691, GSE131580, ENCSR381DCY, 4DNFIV239W4L, 4DNFIOUSETUP, ENCSR128RPG, 4DNFI1UEG1HD, GSE101921, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR338WUS, 4DNFIP71EWXC, 4DNFIHN2QSMX, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: HCT116-mAID,HPC,SLK,P3HR-1,K-562,MCF-10A,CMK,U2OS,iPSC-megakaryocytes,NUGC-3
- Cohesin-DEGs, number of studies: 14
- Cohesin-DEGs, study: GSE137253,GSE140651,GSE119828,GSE154086,GSE131448,GSE138937,GSE106886,GSE89799
- Cohesin-DEGs, subunit: SMC3,NIPBL,SA2,CTCF,SMC1,Rad21,CdLS