Deatailed information for gene ENSG00000160194
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00010434
- Gene Symbol: NDUFV3
- Ensembl ID: ENSG00000160194
-
Gene locus: chr21:42893267-42913304
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
chr21-42888778-42889585,
chr21-42890204-42894569,
chr21-42895138-42895610,
chr21-42896014-42896815,
chr21-42897274-42897953,
chr21-42898298-42898649,
chr21-42898938-42900986,
chr21-42901231-42902142,
chr21-42903879-42905128,
chr21-42905606-42906786,
chr21-42908791-42909506,
chr21-42909724-42911164,
chr21-42912357-42914258,
chr21-42914488-42914837,
chr21-42915076-42915684,
chr21-42916003-42917086,
chr21-42917709-42919392,
chr21-43000878-43004167,
chr21-43005014-43005958,
chr21-43006547-43007242,
chr21-43007563-43008111,
chr21-43008975-43009699,
chr21-43011079-43011547,
chr21-43012278-43013148,
chr21-43016030-43017256,
chr21-43018084-43019388,
chr21-43020175-43023005,
chr21-43023655-43024103,
chr21-43024487-43026869,
chr21-43027260-43028315,
chr21-43028717-43029018,
chr21-43029424-43030648,
chr21-43031865-43032624,
chr21-43033056-43033422,
chr21-43033645-43034830,
chr21-43036478-43039973,
chr21-43040304-43041198,
chr21-43041584-43043029,
chr21-43043372-43043773,
chr21-43044579-43047606,
chr21-43049093-43049369,
chr21-43049841-43050585,
chr21-43099852-43100255,
chr21-43104309-43104688,
chr21-43106709-43112150,
chr21-43112950-43113541,
chr21-43115966-43118415,
chr21-43167531-43179410,
chr21-43179782-43180289,
chr21-43180997-43181922,
chr21-43186619-43189146,
chr21-43189488-43189736,
chr21-43190641-43195980,
chr21-43196363-43198075,
chr21-43202414-43202849,
chr21-43203180-43204296,
chr21-43205526-43206063,
chr21-43206324-43207655,
chr21-43207866-43208349,
chr21-43208557-43212285,
chr21-43296982-43309547,
chr21-43311036-43327583,
chr21-43328508-43351938,
chr21-43352261-43357227,
chr21-43357471-43370764,
chr21-43371758-43372139,
chr21-43372411-43378616,
chr21-43595004-43602071,
chr21-43602287-43614768,
chr21-43616172-43617037,
chr21-43618660-43619178,
chr21-43619389-43620762,
chr21-43621197-43621495,
chr21-43624303-43624805,
chr21-43626450-43626836,
chr21-43627385-43627862,
chr21-43631250-43632687,
chr21-43634076-43634294,
chr21-43634658-43635007,
chr21-43635772-43636021,
chr21-43636596-43637015,
chr21-43638930-43640728,
chr21-43640994-43641471,
chr21-43642814-43643056,
chr21-43643270-43649915,
chr21-43650183-43650609,
chr21-43652784-43653261,
chr21-43653524-43654073,
chr21-43654592-43655821,
chr21-43657025-43661637,
chr21-43663113-43663746,
chr21-43665582-43666779,
chr21-43667345-43668735,
chr21-43669130-43669692,
chr21-43669978-43670612,
chr21-43671144-43671960,
chr21-43672190-43672490,
chr21-43673349-43673603,
chr21-43714967-43730833,
chr21-43761154-43780032,
chr21-43780561-43783971,
chr21-43784528-43784755,
chr21-43785556-43790918,
chr21-43791128-43792803,
chr21-43793228-43795435,
chr21-43796477-43821123,
chr21-44244978-44251442,
chr21-44251673-44252226,
chr21-44252559-44252895,
chr21-44253503-44259739,
chr21-44260974-44262029,
chr21-44262549-44268928,
chr21-44270131-44273478,
chr21-44273834-44274503,
chr21-44274897-44275317,
chr21-44799103-44805501,
chr21-44806825-44807985,
chr21-44808233-44808856,
chr21-44809850-44811758,
chr21-44812135-44814175,
chr21-44814747-44820942,
chr21-44823998-44825617,
-
Co-expression with cohesin genes Rho = 0.4048
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.154
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.828
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,TAMR-MCF7,MB157,Keratinocytes192627,H1-Mesendoderm,Olfactory,MCF-7,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,iPSC,Liver,HCT-116,Hep-G2,HT-1376,H1-hESC,HCC1599,Motor-Neuron,U-937,HUES64,CyT49-hESC,HL-60,RT-112,CyT49-endoderm,KBM-7,CyT49-Gut,CC-2551,HAP1,HFF-hTERT
- Related loop:
chr21:42875000-42900000~~chr21:43175000-43200000,
chr21:42875000-42900000~~chr21:43325000-43350000,
chr21:42875000-42900000~~chr21:43350000-43375000,
chr21:42875000-42900000~~chr21:43625000-43650000,
chr21:42875000-42900000~~chr21:43650000-43675000,
chr21:42875000-42900000~~chr21:43775000-43800000,
chr21:42875000-42900000~~chr21:44250000-44275000,
chr21:42875000-42900000~~chr21:44800000-44825000,
chr21:42892194-42894528~~chr21:43717961-43720857,
chr21:42900000-42925000~~chr21:43000000-43025000,
chr21:42900000-42925000~~chr21:43025000-43050000,
chr21:42900000-42925000~~chr21:43100000-43125000,
chr21:42900000-42925000~~chr21:43175000-43200000,
chr21:42900000-42925000~~chr21:43200000-43225000,
chr21:42900000-42925000~~chr21:43300000-43325000,
chr21:42900000-42925000~~chr21:43325000-43350000,
chr21:42900000-42925000~~chr21:43350000-43375000,
chr21:42900000-42925000~~chr21:43600000-43625000,
chr21:42900000-42925000~~chr21:43625000-43650000,
chr21:42900000-42925000~~chr21:43650000-43675000,
chr21:6425000-6450000~~chr21:42900000-42925000,
chr21:6475000-6500000~~chr21:42875000-42900000,
chr21:6475000-6500000~~chr21:42900000-42925000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, 4DNFITUOMFUQ, 4DNFIBN9K4V9, ENCSR852KQC, 4DNFIDSWKFF5, 4DNFI7H4II2V, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, GSE97394, 4DNFICEGAHRC, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFI6XD6JAQ, 4DNFIK61ILGM, GSE116872, ENCSR305RTT, GSE105028, 4DNFIQWD8ZYD, ENCSR662QKG, GSE118716, ENCSR499RVD, 4DNFIOX3BGNE, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFIIMZB6Y9, GSE52457, 4DNFIBT4EAKN, Direct, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, 4DNFI9815EEJ, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDZT7PR8, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIR8OU6QJ, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIFHU75I5, 4DNFIYD8LO9Z, ENCSR123UVP, 4DNFIL9M97T2, 4DNFI3A3VYWU, 4DNFIM2BMJ33, GSE165038, 4DNFIALNLR78, 4DNFIYDBBSE3, 4DNFIEJEFCAM, ENCSR393LOP, 4DNFIE5TEYK7, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, GSE58752, GSE116869, 4DNFIMROE6N4, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIILDWK8M, 4DNFII6AN691, GSE131580, 4DNFIV239W4L, 4DNFIOUSETUP, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, 4DNFI8JFOAJT, 4DNFIQVMVRP6, 4DNFI5LCW273, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence: HL-60,HeLa-S3
- Cohesin-DEGs, number of studies: 2
- Cohesin-DEGs, study: GSE131581,GSE130558
- Cohesin-DEGs, subunit: WAPL,SA2