Deatailed information for gene ENSG00000160208
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00010440
- Gene Symbol: RRP1B
- Ensembl ID: ENSG00000160208
-
Gene locus: chr21:43659559-43696079
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs,
- Regulatory cohesin (double-evidenced):
chr21-42103416-42126825,
chr21-42127155-42127810,
chr21-42128488-42129619,
chr21-42130648-42131154,
chr21-42133171-42133790,
chr21-42135118-42136218,
chr21-42136531-42136713,
chr21-42136966-42138370,
chr21-42139645-42142559,
chr21-42143139-42149312,
chr21-42149675-42151617,
chr21-42599440-42600439,
chr21-42601201-42601742,
chr21-42607142-42608454,
chr21-42609794-42610085,
chr21-42614071-42618253,
chr21-42618578-42619171,
chr21-42619649-42620219,
chr21-42620846-42621537,
chr21-42624120-42625917,
chr21-42826351-42826612,
chr21-42828509-42829093,
chr21-42829440-42829756,
chr21-42830113-42831772,
chr21-42832131-42835353,
chr21-42836729-42839000,
chr21-42839290-42843405,
chr21-42844462-42845085,
chr21-42845314-42846984,
chr21-42847259-42856312,
chr21-42856928-42857550,
chr21-42858264-42858922,
chr21-42859132-42861293,
chr21-42861653-42864957,
chr21-42865222-42866633,
chr21-42867885-42870709,
chr21-42872006-42873778,
chr21-42875265-42875657,
chr21-42875983-42876584,
chr21-42876831-42877399,
chr21-42877653-42880442,
chr21-42881000-42881276,
chr21-42881848-42882396,
chr21-42885959-42886266,
chr21-42888778-42889585,
chr21-42890204-42894569,
chr21-42895138-42895610,
chr21-42896014-42896815,
chr21-42897274-42897953,
chr21-42898298-42898649,
chr21-42898938-42900986,
chr21-42901231-42902142,
chr21-42903879-42905128,
chr21-42905606-42906786,
chr21-42908791-42909506,
chr21-42909724-42911164,
chr21-42912357-42914258,
chr21-42914488-42914837,
chr21-42915076-42915684,
chr21-42916003-42917086,
chr21-42917709-42919392,
chr21-42919813-42921376,
chr21-42921622-42928571,
chr21-42928933-42932902,
chr21-42933507-42933865,
chr21-42936506-42943558,
chr21-42948707-42949766,
chr21-42971699-42976556,
chr21-42977567-42978245,
chr21-42978524-42979165,
chr21-42979449-42979775,
chr21-42980073-42980693,
chr21-42981060-42983699,
chr21-42984049-42984123,
chr21-42984399-42985953,
chr21-42986206-42987380,
chr21-42987592-42989052,
chr21-42989441-42990324,
chr21-42991464-42993497,
chr21-42993747-42994516,
chr21-42996864-42997865,
chr21-42998695-42999369,
chr21-43000878-43004167,
chr21-43005014-43005958,
chr21-43006547-43007242,
chr21-43007563-43008111,
chr21-43008975-43009699,
chr21-43011079-43011547,
chr21-43012278-43013148,
chr21-43016030-43017256,
chr21-43018084-43019388,
chr21-43020175-43023005,
chr21-43023655-43024103,
chr21-43024487-43026869,
chr21-43027260-43028315,
chr21-43028717-43029018,
chr21-43029424-43030648,
chr21-43031865-43032624,
chr21-43033056-43033422,
chr21-43033645-43034830,
chr21-43036478-43039973,
chr21-43040304-43041198,
chr21-43041584-43043029,
chr21-43043372-43043773,
chr21-43044579-43047606,
chr21-43049093-43049369,
chr21-43049841-43050585,
chr21-43167531-43179410,
chr21-43179782-43180289,
chr21-43180997-43181922,
chr21-43186619-43189146,
chr21-43189488-43189736,
chr21-43190641-43195980,
chr21-43196363-43198075,
chr21-43202414-43202849,
chr21-43203180-43204296,
chr21-43205526-43206063,
chr21-43206324-43207655,
chr21-43207866-43208349,
chr21-43208557-43212285,
chr21-43296982-43309547,
chr21-43311036-43327583,
chr21-43328508-43351938,
chr21-43352261-43357227,
chr21-43357471-43370764,
chr21-43371758-43372139,
chr21-43372411-43378616,
chr21-43654592-43655821,
chr21-43657025-43661637,
chr21-43663113-43663746,
chr21-43665582-43666779,
chr21-43667345-43668735,
chr21-43669130-43669692,
chr21-43669978-43670612,
chr21-43671144-43671960,
chr21-43672190-43672490,
chr21-43673349-43673603,
chr21-43675087-43675363,
chr21-43676274-43676773,
chr21-43680040-43680760,
chr21-43680996-43681953,
chr21-43682266-43682785,
chr21-43683749-43684802,
chr21-43686488-43690745,
chr21-43691074-43692529,
chr21-43692796-43693611,
chr21-43693964-43694960,
chr21-43696123-43696928,
chr21-43697136-43699761,
chr21-43699974-43701662,
chr21-43745728-43760952,
chr21-43761154-43780032,
chr21-43919860-43926811,
chr21-43927637-43931258,
chr21-43931599-43933243,
chr21-43933573-43946204,
chr21-43946764-43947625,
chr21-43948082-43948523,
chr21-43949301-43950152,
chr21-44244978-44251442,
chr21-44251673-44252226,
chr21-44252559-44252895,
chr21-44253503-44259739,
chr21-44260974-44262029,
chr21-44262549-44268928,
chr21-44270131-44273478,
chr21-44273834-44274503,
chr21-44274897-44275317,
chr21-44320741-44336654,
chr21-44337821-44343795,
chr21-44344069-44346159,
chr21-44347920-44356379,
chr21-44770932-44775360,
chr21-44775568-44776159,
chr21-44778211-44780009,
chr21-44780867-44781685,
chr21-44784599-44786454,
chr21-44786700-44787596,
chr21-44788341-44788598,
chr21-44789666-44790323,
chr21-44791310-44795621,
chr21-44797363-44798119,
chr21-44799103-44805501,
-
Co-expression with cohesin genes Rho = 0.6253
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.278
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.851
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,Keratinocytes192627,Olfactory,MCF-7,HEK293T,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,iPSC,HCT-116,Germinal-Center-B,Hep-G2,H1-hESC,HCC1599,Motor-Neuron,NaiveB,HL-60,RT-112,CyT49-endoderm,CyT49-Gut,CC-2551,HAP1,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:42125000-42150000~~chr21:43650000-43675000,
chr21:42600000-42625000~~chr21:43650000-43675000,
chr21:42825000-42850000~~chr21:43675000-43700000,
chr21:42850000-42875000~~chr21:43650000-43675000,
chr21:42850000-42875000~~chr21:43675000-43700000,
chr21:42875000-42900000~~chr21:43650000-43675000,
chr21:42900000-42925000~~chr21:43650000-43675000,
chr21:42925000-42950000~~chr21:43650000-43675000,
chr21:42925000-42950000~~chr21:43675000-43700000,
chr21:42975000-43000000~~chr21:43650000-43675000,
chr21:43000000-43025000~~chr21:43650000-43675000,
chr21:43000000-43025000~~chr21:43675000-43700000,
chr21:43025000-43050000~~chr21:43650000-43675000,
chr21:43175000-43200000~~chr21:43650000-43675000,
chr21:43200000-43225000~~chr21:43650000-43675000,
chr21:43300000-43325000~~chr21:43650000-43675000,
chr21:43325000-43350000~~chr21:43650000-43675000,
chr21:43350000-43375000~~chr21:43650000-43675000,
chr21:43350000-43375000~~chr21:43700000-43725000,
chr21:43650000-43675000~~chr21:43750000-43775000,
chr21:43650000-43675000~~chr21:44325000-44350000,
chr21:43650000-43675000~~chr21:44775000-44800000,
chr21:43675000-43700000~~chr21:44250000-44275000,
chr21:43700000-43725000~~chr21:43925000-43950000,
chr21:6100000-6125000~~chr21:43650000-43675000,
chr21:6550000-6575000~~chr21:43650000-43675000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFI3CFMRID, ENCSR662QKG, GSE95015, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIR8OU6QJ, 4DNFI6CWNUFL, GSE43070, 4DNFIMROE6N4, GSE118716, 4DNFITUOMFUQ, 4DNFIE8E4ANZ, ENCSR499RVD, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR852KQC, GSE84022, 4DNFIILDWK8M, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIBM714BP, 4DNFIREVU1Z5, 4DNFII6AN691, 4DNFIFHU75I5, 4DNFIRKGMZRQ, 4DNFIYD8LO9Z, GSE131580, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR444BAR, ENCSR123UVP, 4DNFIL9M97T2, 4DNFIIMZB6Y9, 4DNFI1E6NJQJ, GSE52457, 4DNFI3A3VYWU, 4DNFIM2BMJ33, Direct, 4DNFI6XD6JAQ, 4DNFIAS8LV1C, 4DNFIYDBBSE3, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, GSE101921, 4DNFIK61ILGM, GSE116872, ENCSR244BBG, 4DNFIQRTP7NM, ENCSR393LOP, GSE44267, 4DNFI9815EEJ, 4DNFIOCW5AEM, 4DNFIPAF4PYT, 4DNFIQVMVRP6, 4DNFI9ZWZ5BS, 4DNFI5LCW273, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, 4DNFIP71EWXC, 4DNFIQ2687RT, 4DNFIDBIEXI7, ENCSR094EIC, GSE105028, 4DNFIHN2QSMX, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: CTCF,Other,SMC1
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: MCF-7,HCT116-mAID,SLK,P3HR-1,U2OS,HeLa,NUGC-3
- Cohesin-DEGs, number of studies: 8
- Cohesin-DEGs, study: GSE137253,GSE140651,GSE177045,GSE71420,GSE138937,GSE106886,GSE89799
- Cohesin-DEGs, subunit: Rad21,NIPBL,SMC1