Deatailed information for gene ENSG00000160214
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00010444
- Gene Symbol: RRP1
- Ensembl ID: ENSG00000160214
-
Gene locus: chr21:43789576-43805293
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs,
- Regulatory cohesin (double-evidenced):
chr21-42875265-42875657,
chr21-42875983-42876584,
chr21-42876831-42877399,
chr21-42877653-42880442,
chr21-42881000-42881276,
chr21-42881848-42882396,
chr21-42885959-42886266,
chr21-42888778-42889585,
chr21-42890204-42894569,
chr21-42895138-42895610,
chr21-42896014-42896815,
chr21-42897274-42897953,
chr21-42898298-42898649,
chr21-42898938-42900986,
chr21-43328508-43351938,
chr21-43352261-43357227,
chr21-43357471-43370764,
chr21-43371758-43372139,
chr21-43372411-43378616,
chr21-43714967-43730833,
chr21-43761154-43780032,
chr21-43784528-43784755,
chr21-43785556-43790918,
chr21-43791128-43792803,
chr21-43793228-43795435,
chr21-43796477-43821123,
chr21-43899414-43901125,
chr21-43902347-43902875,
chr21-43903389-43904929,
chr21-43905740-43906024,
chr21-43906608-43910716,
chr21-43911097-43912991,
chr21-43913332-43914290,
chr21-43914602-43914828,
chr21-43915079-43915725,
chr21-43916632-43919024,
chr21-43919860-43926811,
chr21-43927637-43931258,
chr21-43931599-43933243,
chr21-43933573-43946204,
chr21-43946764-43947625,
chr21-43948082-43948523,
chr21-43949301-43950152,
chr21-43950547-43953443,
chr21-43953873-43955291,
chr21-43955636-43960547,
chr21-43960797-43961167,
chr21-43961712-43962335,
chr21-43962563-43962803,
chr21-43963229-43963703,
chr21-43964076-43965453,
chr21-43966040-43970312,
chr21-43970557-43970863,
chr21-43971213-43978635,
chr21-43978988-43982273,
chr21-43982497-43984376,
chr21-43984827-43986234,
chr21-43986653-43987350,
chr21-43987624-43990156,
chr21-43991128-43996175,
chr21-43996484-43996757,
chr21-43997663-43998474,
chr21-43999790-44003430,
chr21-44003656-44007434,
chr21-44007816-44008392,
chr21-44008742-44009011,
chr21-44009756-44016003,
chr21-44016585-44017233,
chr21-44018250-44019461,
chr21-44019691-44020615,
chr21-44021146-44022462,
chr21-44022967-44023469,
chr21-44024829-44026370,
chr21-44049059-44050644,
chr21-44051500-44052149,
chr21-44058034-44059019,
chr21-44060331-44060715,
chr21-44061133-44061570,
chr21-44062415-44062878,
chr21-44063088-44064391,
chr21-44065260-44065880,
chr21-44066159-44066445,
chr21-44067082-44068169,
chr21-44069413-44070104,
chr21-44070382-44070916,
chr21-44071581-44073072,
chr21-44074197-44074929,
chr21-44077348-44077570,
chr21-44078553-44078867,
chr21-44079138-44079687,
chr21-44081500-44084368,
chr21-44084897-44085581,
chr21-44086043-44086366,
chr21-44086762-44089972,
chr21-44090357-44091197,
chr21-44093882-44094111,
chr21-44094969-44096191,
chr21-44274897-44275317,
chr21-44277399-44277711,
chr21-44278029-44278466,
chr21-44278794-44279072,
chr21-44279636-44308260,
chr21-44308534-44320510,
chr21-44320741-44336654,
chr21-44423218-44429069,
chr21-44430427-44430776,
chr21-44431429-44432042,
chr21-44432556-44445133,
chr21-44445469-44446997,
chr21-44447926-44448241,
chr21-44448540-44449289,
chr21-44449493-44451537,
chr21-44454404-44458504,
chr21-44458902-44463283,
chr21-44463692-44468246,
chr21-44470353-44470718,
chr21-44471953-44472348,
chr21-44474024-44474470,
chr21-44474734-44475102,
chr21-44477225-44484621,
chr21-44484854-44488529,
chr21-44488757-44489043,
chr21-44489948-44491135,
chr21-44493207-44494864,
chr21-44495074-44495354,
chr21-44496153-44497242,
chr21-44498019-44500523,
-
Co-expression with cohesin genes Rho = 0.4372
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.226
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.847
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,GM12892,K1,hTERT-HME1,Olfactory,Hepatocyte-H9,GM19239,MCF-7,GM12891,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,LNCaP,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,iPSC,HCT-116,Hep-G2,HT-1197,Kelly,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,U-937,HUES64,SU-DHL-4,HUVEC,HL-60,NPC-H9,RT-112,Skin-Fibroblast,KBM-7,Jurkat,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:42875000-42900000~~chr21:43775000-43800000,
chr21:43350000-43375000~~chr21:43775000-43800000,
chr21:43717830-43720923~~chr21:43788650-43790245,
chr21:43718134-43720810~~chr21:43788562-43790300,
chr21:43727966-43729871~~chr21:43788671-43790700,
chr21:43775000-43800000~~chr21:44000000-44025000,
chr21:43775000-43800000~~chr21:44275000-44300000,
chr21:43775010-43777246~~chr21:43788671-43790700,
chr21:43775246-43777294~~chr21:43788686-43790650,
chr21:43788328-43790829~~chr21:43804831-43806258,
chr21:43788506-43790376~~chr21:43804838-43806274,
chr21:43800000-43825000~~chr21:43900000-43925000,
chr21:43800000-43825000~~chr21:43925000-43950000,
chr21:43800000-43825000~~chr21:43950000-43975000,
chr21:43800000-43825000~~chr21:43975000-44000000,
chr21:43800000-43825000~~chr21:44050000-44075000,
chr21:43800000-43825000~~chr21:44075000-44100000,
chr21:43800000-43825000~~chr21:44275000-44300000,
chr21:43800000-43825000~~chr21:44300000-44325000,
chr21:43800000-43825000~~chr21:44425000-44450000,
chr21:43800000-43825000~~chr21:44450000-44475000,
chr21:43800000-43825000~~chr21:44475000-44500000,
chr21:43809382-43811979~~chr21:43938102-43940319,
chr21:43809382-43811979~~chr21:43974430-43976463,
chr21:43809402-43812987~~chr21:43937998-43940483,
chr21:43809402-43812987~~chr21:43973909-43976433,
chr21:43809567-43812215~~chr21:43938147-43940210,
chr21:43809567-43812215~~chr21:43974787-43976435,
chr21:43809663-43812024~~chr21:43938130-43940598,
chr21:43809663-43812024~~chr21:43973981-43976441,
chr21:43809751-43812069~~chr21:43938146-43940360,
chr21:43809751-43812069~~chr21:43974026-43976462,
chr21:43809780-43812025~~chr21:43937351-43940350,
chr21:43809780-43812025~~chr21:43974566-43976455,
chr21:43809822-43812066~~chr21:43938314-43940308,
chr21:43809822-43812066~~chr21:43974421-43976456,
chr21:43809836-43812161~~chr21:43974117-43976475,
chr21:43809837-43812010~~chr21:43974013-43976446,
chr21:43809858-43811985~~chr21:43974577-43976426,
chr21:43809874-43812232~~chr21:43938166-43940313,
chr21:43809874-43812232~~chr21:43974053-43976449,
chr21:43809884-43811948~~chr21:43974148-43976447,
chr21:43809929-43812308~~chr21:43938119-43940276,
chr21:43809929-43812308~~chr21:43974440-43976928,
chr21:43809936-43811851~~chr21:43938091-43940342,
chr21:43809936-43811851~~chr21:43974410-43976452,
chr21:43809955-43812182~~chr21:43937376-43940406,
chr21:43809955-43812182~~chr21:43974447-43976466,
chr21:43809957-43811896~~chr21:43974472-43976413,
chr21:43809958-43812169~~chr21:43938137-43940345,
chr21:43809958-43812169~~chr21:43974462-43976449,
chr21:43809964-43812081~~chr21:43974014-43976410,
chr21:43809964-43812139~~chr21:43974031-43976437,
chr21:43809967-43812015~~chr21:43974450-43976445,
chr21:43809981-43812494~~chr21:43937312-43940274,
chr21:43809981-43812494~~chr21:43974450-43976469,
chr21:43809983-43812004~~chr21:43938179-43940032,
chr21:43809983-43812004~~chr21:43974839-43976402,
chr21:43809988-43812007~~chr21:43938388-43940364,
chr21:43809988-43812007~~chr21:43974561-43976421,
chr21:43809990-43812835~~chr21:43938132-43940331,
chr21:43809990-43812835~~chr21:43974152-43976419,
chr21:43810016-43812009~~chr21:43974500-43976459,
chr21:43810024-43812849~~chr21:43938199-43940241,
chr21:43810024-43812849~~chr21:43974222-43976419,
chr21:43810025-43812953~~chr21:43938174-43940320,
chr21:43810025-43812953~~chr21:43974423-43976434,
chr21:43810028-43812062~~chr21:43938199-43940196,
chr21:43810028-43812062~~chr21:43974423-43976449,
chr21:43810035-43812029~~chr21:43928620-43930391,
chr21:43810045-43812004~~chr21:43938352-43940333,
chr21:43810045-43812004~~chr21:43974447-43976457,
chr21:43810055-43811742~~chr21:43938352-43940235,
chr21:43810055-43811742~~chr21:43973889-43976395,
chr21:43810055-43811991~~chr21:43974703-43976454,
chr21:43810097-43811911~~chr21:43938320-43940033,
chr21:43810097-43811911~~chr21:43974910-43976403,
chr21:43810103-43811948~~chr21:43974548-43976478,
chr21:43810123-43811942~~chr21:43917618-43918968,
chr21:43810123-43811942~~chr21:43938439-43940277,
chr21:43810123-43811942~~chr21:43974542-43976436,
chr21:43810123-43812202~~chr21:43938189-43940198,
chr21:43810123-43812202~~chr21:43974877-43976337,
chr21:43810128-43811870~~chr21:43938201-43940161,
chr21:43810128-43811870~~chr21:43974522-43976498,
chr21:43810159-43811962~~chr21:43974889-43976406,
chr21:43810178-43811879~~chr21:43938216-43940232,
chr21:43810178-43811879~~chr21:43974924-43976401,
chr21:43810180-43811928~~chr21:43938483-43940038,
chr21:43810183-43812126~~chr21:43938416-43940278,
chr21:43810183-43812126~~chr21:43974692-43976430,
chr21:43810184-43811892~~chr21:43938367-43940171,
chr21:43810200-43811858~~chr21:43974728-43976472,
chr21:43810219-43811821~~chr21:43974922-43976345,
chr21:5100000-5125000~~chr21:43800000-43825000,
chr21:5125000-5150000~~chr21:43800000-43825000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, 4DNFITUOMFUQ, 4DNFIVOJGWNP, ENCSR852KQC, ENCSR361AYD, 4DNFIDSWKFF5, GSE103148, 4DNFIZ4F74QR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, ENCSR113OIR, 4DNFI9VXTBE2, ENCSR668RDP, 4DNFIS3DIH4V, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFIJ5DQZVK, ENCSR658RQQ, ENCSR299VMZ, 4DNFISPUVQHA, 4DNFI8Y9SRP2, GSE116872, ENCSR305RTT, ENCSR000FDB, ENCSR527RXH, GSE105028, ENCSR833CMG, 4DNFIBKZK63V, ENCSR033GUP, 4DNFIIFBC8WN, ENCSR662QKG, GSE118716, ENCSR499RVD, GSE155380, 4DNFIJWBWE41, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, 4DNFIBT4EAKN, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIAS8LV1C, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9815EEJ, 4DNFI2J1ODWB, 4DNFIFLJLIS5, 4DNFIDZT7PR8, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIH2A7IKF, ENCSR194SRI, 4DNFIBRSIPE4, 4DNFI6CWNUFL, 4DNFI5CGQ46V, 4DNFIR8OU6QJ, GSE120294, 4DNFIPV5KFMK, ENCSR672RHL, ENCSR410MDC, 4DNFI5ERM9J7, ENCSR732QOH, 4DNFIFHU75I5, 4DNFIYD8LO9Z, 4DNFI15FPSQL, ENCSR123UVP, 4DNFIJBJ6QVH, 4DNFI3A3VYWU, 4DNFIX4PJKXZ, GSE165038, 4DNFIBY3UHJB, ENCSR386KHY, 4DNFIEJEFCAM, ENCSR393LOP, ENCSR255XYX, ENCSR404HWQ, 4DNFIE5TEYK7, ENCSR933UZH, ENCSR094EIC, GSE116869, 4DNFIMROE6N4, 4DNFI5SUHCGZ, 4DNFIILDWK8M, ENCSR866FWQ, 4DNFI6EIFUZI, GSE131580, ENCSR381DCY, ENCSR981FNA, 4DNFIOUSETUP, ENCSR752QCX, 4DNFIJ3DZPGM, ENCSR128RPG, 4DNFISTWNV9C, GSE101921, ENCSR228TUX, 4DNFIC3HAU11, ENCSR247RGI, ENCSR338WUS, 4DNFI5LCW273, 4DNFIP71EWXC, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: HCT116-mAID,HPC,HL-60,SLK,P3HR-1,HAP1,U2OS,HeLa-S3
- Cohesin-DEGs, number of studies: 8
- Cohesin-DEGs, study: GSE140651,GSE131581,GSE119828,GSE126635,GSE138937,GSE106886,GSE89799,GSE130558
- Cohesin-DEGs, subunit: SA2,WAPL,CTCF,SMC1,Rad21,CdLS