Browse_each

Basic information

CohesinDB ID: CDBG00010446

Gene Symbol: TRAPPC10

Ensembl ID: ENSG00000160218

Gene locus: chr21:44012308-44106552 Strand: +

Gene type: protein_coding

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): True

All evidenced type: Interaction,DEGs,

Regulatory cohesin (double-evidenced): chr21-43000878-43004167, chr21-43005014-43005958, chr21-43006547-43007242, chr21-43007563-43008111, chr21-43008975-43009699, chr21-43011079-43011547, chr21-43012278-43013148, chr21-43016030-43017256, chr21-43018084-43019388, chr21-43020175-43023005, chr21-43023655-43024103, chr21-43024487-43026869, chr21-43027260-43028315, chr21-43028717-43029018, chr21-43029424-43030648, chr21-43031865-43032624, chr21-43033056-43033422, chr21-43033645-43034830, chr21-43036478-43039973, chr21-43040304-43041198, chr21-43041584-43043029, chr21-43043372-43043773, chr21-43044579-43047606, chr21-43049093-43049369, chr21-43049841-43050585, chr21-43167531-43179410, chr21-43179782-43180289, chr21-43180997-43181922, chr21-43186619-43189146, chr21-43189488-43189736, chr21-43190641-43195980, chr21-43196363-43198075, chr21-43202414-43202849, chr21-43203180-43204296, chr21-43205526-43206063, chr21-43206324-43207655, chr21-43207866-43208349, chr21-43208557-43212285, chr21-43296982-43309547, chr21-43311036-43327583, chr21-43328508-43351938, chr21-43352261-43357227, chr21-43357471-43370764, chr21-43371758-43372139, chr21-43372411-43378616, chr21-43745728-43760952, chr21-43761154-43780032, chr21-43780561-43783971, chr21-43784528-43784755, chr21-43785556-43790918, chr21-43791128-43792803, chr21-43793228-43795435, chr21-43796477-43821123, chr21-43821535-43822584, chr21-43823281-43831732, chr21-43831999-43836730, chr21-43838775-43839950, chr21-43841496-43841801, chr21-43842220-43843844, chr21-43844363-43846062, chr21-43846899-43848050, chr21-43848774-43849113, chr21-43849633-43862147, chr21-43862655-43863537, chr21-43863868-43868789, chr21-43869455-43870414, chr21-43871491-43871651, chr21-43872321-43873703, chr21-43874006-43875186, chr21-43919860-43926811, chr21-43927637-43931258, chr21-43931599-43933243, chr21-43933573-43946204, chr21-43946764-43947625, chr21-43948082-43948523, chr21-43949301-43950152, chr21-43950547-43953443, chr21-43953873-43955291, chr21-43955636-43960547, chr21-43960797-43961167, chr21-43961712-43962335, chr21-43962563-43962803, chr21-43963229-43963703, chr21-43964076-43965453, chr21-43966040-43970312, chr21-43970557-43970863, chr21-43971213-43978635, chr21-43978988-43982273, chr21-43982497-43984376, chr21-43984827-43986234, chr21-43986653-43987350, chr21-43987624-43990156, chr21-43991128-43996175, chr21-43996484-43996757, chr21-43997663-43998474, chr21-43999790-44003430, chr21-44003656-44007434, chr21-44007816-44008392, chr21-44008742-44009011, chr21-44009756-44016003, chr21-44016585-44017233, chr21-44018250-44019461, chr21-44019691-44020615, chr21-44021146-44022462, chr21-44022967-44023469, chr21-44024829-44026370, chr21-44026684-44026973, chr21-44027505-44027848, chr21-44028245-44030150, chr21-44030507-44031055, chr21-44031429-44031975, chr21-44032361-44032700, chr21-44033569-44033850, chr21-44034785-44035350, chr21-44037935-44038524, chr21-44038873-44039863, chr21-44040458-44040984, chr21-44041439-44041931, chr21-44043223-44044061, chr21-44044699-44045290, chr21-44046465-44047576, chr21-44048020-44048763, chr21-44049059-44050644, chr21-44051500-44052149, chr21-44058034-44059019, chr21-44060331-44060715, chr21-44061133-44061570, chr21-44062415-44062878, chr21-44063088-44064391, chr21-44065260-44065880, chr21-44066159-44066445, chr21-44067082-44068169, chr21-44069413-44070104, chr21-44070382-44070916, chr21-44071581-44073072, chr21-44074197-44074929, chr21-44077348-44077570, chr21-44078553-44078867, chr21-44079138-44079687, chr21-44081500-44084368, chr21-44084897-44085581, chr21-44086043-44086366, chr21-44086762-44089972, chr21-44090357-44091197, chr21-44093882-44094111, chr21-44094969-44096191, chr21-44106721-44108797, chr21-44173865-44179849, chr21-44180238-44182493, chr21-44184317-44187032, chr21-44188310-44188648, chr21-44190305-44191390, chr21-44192164-44195002, chr21-44195889-44198272, chr21-44199123-44199370, chr21-44199741-44200119, chr21-44244978-44251442, chr21-44251673-44252226, chr21-44252559-44252895, chr21-44253503-44259739, chr21-44260974-44262029, chr21-44262549-44268928, chr21-44270131-44273478, chr21-44273834-44274503, chr21-44274897-44275317, chr21-44277399-44277711, chr21-44278029-44278466, chr21-44278794-44279072, chr21-44279636-44308260, chr21-44308534-44320510, chr21-44320741-44336654, chr21-44337821-44343795, chr21-44344069-44346159, chr21-44347920-44356379, chr21-44423218-44429069, chr21-44430427-44430776, chr21-44431429-44432042, chr21-44432556-44445133, chr21-44445469-44446997, chr21-44447926-44448241, chr21-44448540-44449289, chr21-44449493-44451537, chr21-44454404-44458504, chr21-44458902-44463283, chr21-44463692-44468246, chr21-44470353-44470718, chr21-44471953-44472348, chr21-44474024-44474470, chr21-44474734-44475102, chr21-44477225-44484621, chr21-44484854-44488529, chr21-44488757-44489043, chr21-44489948-44491135, chr21-44493207-44494864, chr21-44495074-44495354, chr21-44496153-44497242, chr21-44498019-44500523, chr21-44724719-44725397, chr21-44726838-44728488, chr21-44729260-44730345, chr21-44730663-44731098, chr21-44731456-44731919, chr21-44732256-44737281, chr21-44737533-44737682, chr21-44738634-44738881, chr21-44740003-44740352, chr21-44741922-44744934, chr21-44747978-44748295, chr21-44748543-44754678, chr21-44770932-44775360, chr21-44775568-44776159, chr21-44778211-44780009, chr21-44780867-44781685, chr21-44784599-44786454, chr21-44786700-44787596, chr21-44788341-44788598, chr21-44789666-44790323, chr21-44791310-44795621, chr21-44797363-44798119, chr21-44799103-44805501, chr21-44806825-44807985, chr21-44808233-44808856, chr21-44809850-44811758, chr21-44812135-44814175, chr21-44814747-44820942, chr21-44823998-44825617, chr21-44842094-44850066, chr21-44850330-44851998, chr21-44852235-44856871, chr21-44857206-44857817, chr21-44858153-44859485, chr21-44860020-44862529, chr21-44862997-44876511, chr21-44876848-44922035, chr21-45070965-45077708, chr21-45078393-45078715, chr21-45078916-45079630, chr21-45080769-45082062, chr21-45082864-45083141, chr21-45085838-45086729, chr21-45086995-45087695, chr21-45088081-45088374, chr21-45091483-45092239, chr21-45092882-45093760, chr21-45094481-45095831, chr21-45096100-45096976, chr21-45097465-45100018, chr21-45100319-45101486, chr21-45101929-45103660, chr21-45103974-45105286, chr21-45105742-45106561, chr21-45107832-45108500, chr21-45108813-45111932, chr21-45112347-45112730, chr21-45113415-45114548, chr21-45120399-45121586, chr21-45123354-45124151, chr21-45124436-45132048, chr21-45132786-45143934, chr21-45145219-45145603, chr21-45145953-45146151, chr21-45147401-45149408, chr21-45251073-45259845, chr21-45261057-45263926, chr21-45264207-45270973, chr21-45276631-45278067, chr21-45278276-45280924, chr21-45281215-45285084, chr21-45285295-45286241, chr21-45286477-45297005, chr21-45297393-45298845, chr21-45299162-45312040, chr21-45372804-45377258, chr21-45377752-45389221, chr21-45390007-45394664, chr21-45395800-45396908, chr21-45398447-45398741, chr21-45399838-45400087, chr21-45447735-45461753, chr21-45463590-45484721,

Co-expression with cohesin genes Rho = 0.6711 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.257
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.837
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,H1-Mesenchymal,H1-Mesendoderm,Olfactory,MCF-7,HEK293T,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,iPSC,Liver,OCI-AML-3,HCT-116,REC-1,Hep-G2,H1-hESC,HCC1599,GM19238,Motor-Neuron,NaiveB,U-937,SU-DHL-4,CyT49-hESC,HUVEC,HL-60,RT-112,CyT49-endoderm,KBM-7,CyT49-Gut,HFF-hTERT,HAP1,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIQYQWPF5, GSE95015, GSE43070, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, ENCSR794RDS, ENCSR852KQC, 4DNFIDSWKFF5, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, 4DNFIKYXMF1E, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, ENCSR658RQQ, 4DNFISPUVQHA, 4DNFIK61ILGM, GSE116872, ENCSR305RTT, 4DNFI7XAZNNQ, ENCSR527RXH, GSE105028, 4DNFIQWD8ZYD, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, 4DNFIB7QTIMH, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFIIMZB6Y9, GSE80820, GSE52457, Direct, 4DNFIV56OFE3, 4DNFIYIAUEPW, ENCSR244BBG, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIH2A7IKF, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIBRSIPE4, 4DNFIR8OU6QJ, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, GSE84022, ENCSR410MDC, 4DNFIXU2KPNQ, 4DNFIBM714BP, 4DNFIYD8LO9Z, ENCSR123UVP, 4DNFIJBJ6QVH, 4DNFI3A3VYWU, ENCSR637QCS, 4DNFIM2BMJ33, GSE165038, 4DNFIYDBBSE3, 4DNFIEJEFCAM, 4DNFIQRTP7NM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, 4DNFIJ8JKKWJ, 4DNFIDKJFK2S, ENCSR094EIC, GSE58752, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIILDWK8M, 4DNFIP25GZGA, ENCSR866FWQ, 4DNFIBCIA62Q, 4DNFII6AN691, GSE111537, GSE131580, 4DNFISTWNV9C, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFIZF1KI43, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFI5LCW273, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFILIM6FDL, 4DNFII84FBKM, 4DNFIVSCH2CH

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: True

Involved cell types for DEG evidence: HL-60,HPC,HeLa-S3,P3HR-1

Cohesin-DEGs, number of studies: 4

Cohesin-DEGs, study: GSE140651,GSE131581,GSE119828,GSE108869

Cohesin-DEGs, subunit: CTCF,SMC1,CdLS,SA2

eachgene

Deatailed information for gene ENSG00000160218