Deatailed information for gene ENSG00000160221
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00010448
- Gene Symbol: GATD3A
- Ensembl ID: ENSG00000160221
-
Gene locus: chr21:44133609-44197892
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs
- Regulatory cohesin (double-evidenced):
chr21-44049059-44050644,
chr21-44051500-44052149,
chr21-44058034-44059019,
chr21-44060331-44060715,
chr21-44061133-44061570,
chr21-44062415-44062878,
chr21-44063088-44064391,
chr21-44065260-44065880,
chr21-44066159-44066445,
chr21-44067082-44068169,
chr21-44069413-44070104,
chr21-44070382-44070916,
chr21-44071581-44073072,
chr21-44074197-44074929,
chr21-44077348-44077570,
chr21-44078553-44078867,
chr21-44079138-44079687,
chr21-44081500-44084368,
chr21-44084897-44085581,
chr21-44086043-44086366,
chr21-44086762-44089972,
chr21-44090357-44091197,
chr21-44093882-44094111,
chr21-44094969-44096191,
chr21-44131339-44132312,
chr21-44132653-44134411,
chr21-44134730-44135728,
chr21-44136419-44149190,
chr21-44150556-44151003,
chr21-44153124-44161484,
chr21-44162052-44162520,
chr21-44163350-44164569,
chr21-44165080-44167741,
chr21-44170128-44171339,
chr21-44171699-44172159,
chr21-44172520-44173627,
chr21-44173865-44179849,
chr21-44180238-44182493,
chr21-44184317-44187032,
chr21-44188310-44188648,
chr21-44190305-44191390,
chr21-44192164-44195002,
chr21-44195889-44198272,
chr21-44199123-44199370,
chr21-44199741-44200119,
chr21-44201022-44205224,
chr21-44244978-44251442,
chr21-44251673-44252226,
chr21-44252559-44252895,
chr21-44253503-44259739,
chr21-44260974-44262029,
chr21-44262549-44268928,
chr21-44270131-44273478,
chr21-44273834-44274503,
chr21-44274897-44275317,
chr21-44277399-44277711,
chr21-44278029-44278466,
chr21-44278794-44279072,
chr21-44279636-44308260,
chr21-44308534-44320510,
chr21-44320741-44336654,
chr21-44337821-44343795,
chr21-44344069-44346159,
chr21-44347920-44356379,
chr21-44474734-44475102,
chr21-44477225-44484621,
chr21-44484854-44488529,
chr21-44488757-44489043,
chr21-44489948-44491135,
chr21-44493207-44494864,
chr21-44495074-44495354,
chr21-44496153-44497242,
chr21-44498019-44500523,
chr21-44699438-44700075,
chr21-44700276-44701276,
chr21-44701494-44705032,
chr21-44705399-44713548,
chr21-44716685-44716835,
chr21-44718430-44719031,
chr21-44721222-44721639,
chr21-44721934-44722192,
chr21-44723185-44724478,
chr21-44724719-44725397,
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Co-expression with cohesin genes Rho = 0.0914
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.384
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.846
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,TAMR-MCF7,Keratinocytes192627,Olfactory,MCF-7,SARS-Cov2-olfactory,GM12878,K-562,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,HCT-116,H1-hESC,CyT49-hESC,CyT49-endoderm,CyT49-Gut,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:44050000-44075000~~chr21:44175000-44200000,
chr21:44075000-44100000~~chr21:44175000-44200000,
chr21:44125000-44150000~~chr21:44275000-44300000,
chr21:44125000-44150000~~chr21:44475000-44500000,
chr21:44150000-44175000~~chr21:44250000-44275000,
chr21:44150000-44175000~~chr21:44275000-44300000,
chr21:44150000-44175000~~chr21:44475000-44500000,
chr21:44175000-44200000~~chr21:44275000-44300000,
chr21:44175000-44200000~~chr21:44300000-44325000,
chr21:44175000-44200000~~chr21:44325000-44350000,
chr21:44175000-44200000~~chr21:44700000-44725000,
chr21:5025000-5050000~~chr21:44175000-44200000,
chr21:5050000-5075000~~chr21:44175000-44200000,
chr21:5050000-5075000~~chr21:44200000-44225000,
chr21:5075000-5100000~~chr21:44150000-44175000,
chr21:5075000-5100000~~chr21:44175000-44200000,
chr21:5100000-5125000~~chr21:44125000-44150000,
chr21:5100000-5125000~~chr21:44150000-44175000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop study:
4DNFIQYQWPF5, 4DNFI5CGQ46V, 4DNFIMROE6N4, 4DNFITUOMFUQ, GSE118716, 4DNFI5SUHCGZ, 4DNFIZ4F74QR, 4DNFI7H4II2V, ENCSR410MDC, 4DNFIHKWIZ9T, 4DNFIEYQ5ZIR, 4DNFI6EIFUZI, 4DNFIF2D3TL9, 4DNFIBCIA62Q, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, 4DNFIJWBWE41, 4DNFICEGAHRC, 4DNFIIMZB6Y9, 4DNFIL9M97T2, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, Direct, 4DNFIYDBBSE3, 4DNFI1UEG1HD, 4DNFIEJEFCAM, 4DNFIQRTP7NM, 4DNFI9815EEJ, 4DNFIC3HAU11, 4DNFI9ZWZ5BS, 4DNFI7XAZNNQ, 4DNFIJ8JKKWJ, 4DNFIP71EWXC, 4DNFIFLJLIS5, 4DNFILIM6FDL, 4DNFIDZT7PR8, 4DNFINEQY95T, 4DNFIQ2687RT, 4DNFIS5F6EBL, 4DNFIH7TH4MF, 4DNFII84FBKM
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: SLK,HPC,OCI-AML-3,Fibroblast,iPSC-cardiomyocytes
- Cohesin-DEGs, number of studies: 5
- Cohesin-DEGs, study: GSE102873,GSE111537,GSE119828,GSE138937,SRP050576
- Cohesin-DEGs, subunit: CTCF,CdLS,SA2