Deatailed information for gene ENSG00000171587
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00013089
- Gene Symbol: DSCAM
- Ensembl ID: ENSG00000171587
-
Gene locus: chr21:40010998-40847158
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.1204
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.777
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: H9-endodermal,TAMR-MCF7,MB157,Keratinocytes192627,GM12892,K1,hTERT-HME1,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,GM19239,HEK293T,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,MSiPS,K-562,Naive-hESC,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,LNCaP,H1-Trophectoderm,SU-DHL-2,H9-hESC,KU-19-19,Primed-hESC,NCI-H1437,iPSC,Liver,ARPE-19,OCI-AML-3,Hep-G2,HT-1197,Kelly,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,HUES64,SU-DHL-4,CyT49-hESC,HUVEC,HL-60,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,Jurkat,CyT49-Gut,CC-2551,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:31250000-31275000~~chr21:40150000-40175000,
chr21:39500000-39525000~~chr21:40025000-40050000,
chr21:39500000-39525000~~chr21:40050000-40075000,
chr21:39500000-39525000~~chr21:40100000-40125000,
chr21:39500000-39525000~~chr21:40125000-40150000,
chr21:39500000-39525000~~chr21:40350000-40375000,
chr21:39517259-39519458~~chr21:40120108-40122096,
chr21:39517315-39519547~~chr21:40120304-40121958,
chr21:39517570-39519399~~chr21:40120443-40121742,
chr21:39525000-39550000~~chr21:40075000-40100000,
chr21:39525000-39550000~~chr21:40100000-40125000,
chr21:39525000-39550000~~chr21:40125000-40150000,
chr21:39600000-39625000~~chr21:40050000-40075000,
chr21:39600000-39625000~~chr21:40075000-40100000,
chr21:39600000-39625000~~chr21:40100000-40125000,
chr21:39750000-39775000~~chr21:40525000-40550000,
chr21:39750000-39775000~~chr21:40625000-40650000,
chr21:39775000-39800000~~chr21:40000000-40025000,
chr21:39775000-39800000~~chr21:40075000-40100000,
chr21:39775000-39800000~~chr21:40100000-40125000,
chr21:39775000-39800000~~chr21:40125000-40150000,
chr21:39775000-39800000~~chr21:40375000-40400000,
chr21:39787215-39789565~~chr21:40120093-40122096,
chr21:39787253-39789571~~chr21:40120165-40122042,
chr21:39787299-39789416~~chr21:40120132-40122088,
chr21:39787325-39789860~~chr21:40119606-40122062,
chr21:39787329-39789539~~chr21:40119863-40122093,
chr21:39787332-39789505~~chr21:40120236-40122026,
chr21:39787336-39789600~~chr21:40119842-40122098,
chr21:39787340-39789791~~chr21:40120108-40122096,
chr21:39787452-39789550~~chr21:40119861-40122095,
chr21:39787515-39789551~~chr21:40120098-40121959,
chr21:39787550-39789577~~chr21:40119552-40122087,
chr21:39787674-39789450~~chr21:40120405-40121950,
chr21:39787674-39789450~~chr21:40385781-40387172,
chr21:39787686-39789383~~chr21:40120169-40122003,
chr21:39787697-39789341~~chr21:40120354-40121926,
chr21:39787701-39789371~~chr21:40120284-40121931,
chr21:39787705-39789776~~chr21:40120273-40121717,
chr21:39787706-39789391~~chr21:40120171-40121990,
chr21:39787712-39789349~~chr21:40120365-40121817,
chr21:39787716-39789399~~chr21:40120443-40121742,
chr21:39787717-39789400~~chr21:40120433-40122067,
chr21:39787718-39789326~~chr21:40120460-40121701,
chr21:39787723-39789945~~chr21:40120221-40121922,
chr21:39787733-39789380~~chr21:40120291-40121826,
chr21:39787751-39789240~~chr21:40120130-40122082,
chr21:39787773-39789310~~chr21:40120389-40121831,
chr21:39850000-39875000~~chr21:40050000-40075000,
chr21:39850000-39875000~~chr21:40100000-40125000,
chr21:39850000-39875000~~chr21:40125000-40150000,
chr21:39850000-39875000~~chr21:40275000-40300000,
chr21:39850000-39875000~~chr21:40375000-40400000,
chr21:39866128-39868467~~chr21:40119863-40122093,
chr21:39866153-39868505~~chr21:40120196-40122032,
chr21:39866192-39868418~~chr21:40119606-40122062,
chr21:39866204-39868182~~chr21:40119842-40122098,
chr21:39866213-39868462~~chr21:40120304-40121958,
chr21:39866223-39868177~~chr21:40120108-40122096,
chr21:39866253-39868184~~chr21:40120212-40121973,
chr21:39866275-39868439~~chr21:40119552-40122087,
chr21:39866285-39868187~~chr21:40120420-40122028,
chr21:39866287-39868162~~chr21:40120151-40122075,
chr21:39866296-39868156~~chr21:40119861-40122095,
chr21:39866307-39868195~~chr21:40120272-40122048,
chr21:39866353-39868186~~chr21:40120101-40122033,
chr21:39866375-39868193~~chr21:40120236-40122026,
chr21:39866435-39868216~~chr21:40120098-40121959,
chr21:39866538-39868625~~chr21:40120093-40122096,
chr21:39866598-39868148~~chr21:40120301-40121901,
chr21:39866650-39867964~~chr21:40120464-40121810,
chr21:39866655-39868186~~chr21:40120401-40121860,
chr21:39866691-39868175~~chr21:40120100-40122051,
chr21:39866701-39868153~~chr21:40120452-40121717,
chr21:39866710-39868154~~chr21:40120460-40121701,
chr21:39866742-39867981~~chr21:40120389-40121831,
chr21:39880996-39882805~~chr21:40119552-40122087,
chr21:39881013-39882847~~chr21:40119863-40122093,
chr21:39900000-39925000~~chr21:40100000-40125000,
chr21:39900000-39925000~~chr21:40375000-40400000,
chr21:39907747-39909282~~chr21:40119552-40122087,
chr21:39975000-40000000~~chr21:40075000-40100000,
chr21:39975000-40000000~~chr21:40450000-40475000,
chr21:40043057-40044409~~chr21:40120291-40121826,
chr21:40075000-40100000~~chr21:40300000-40325000,
chr21:40125000-40150000~~chr21:40225000-40250000,
chr21:40125000-40150000~~chr21:40300000-40325000,
chr21:40125000-40150000~~chr21:40325000-40350000,
chr21:40125000-40150000~~chr21:40375000-40400000,
chr21:40125000-40150000~~chr21:40400000-40425000,
chr21:40125000-40150000~~chr21:40425000-40450000,
chr21:40125000-40150000~~chr21:40500000-40525000,
chr21:40125000-40150000~~chr21:40625000-40650000,
chr21:40125000-40150000~~chr21:40675000-40700000,
chr21:40125000-40150000~~chr21:40700000-40725000,
chr21:40125000-40150000~~chr21:40825000-40850000,
chr21:40125000-40150000~~chr21:40900000-40925000,
chr21:40125000-40150000~~chr21:41000000-41025000,
chr21:40125000-40150000~~chr21:41025000-41050000,
chr21:40125000-40150000~~chr21:41050000-41075000,
chr21:40125000-40150000~~chr21:41075000-41100000,
chr21:40125000-40150000~~chr21:41125000-41150000,
chr21:40125000-40150000~~chr21:41450000-41475000,
chr21:40142884-40144840~~chr21:41045200-41046358,
chr21:40142884-40144840~~chr21:41068233-41070192,
chr21:40143196-40145254~~chr21:40841232-40842970,
chr21:40143203-40144858~~chr21:41068086-41070092,
chr21:40143203-40144858~~chr21:41133242-41135103,
chr21:40143203-40145143~~chr21:40385550-40387260,
chr21:40143209-40145089~~chr21:40385777-40387210,
chr21:40143209-40145089~~chr21:41068098-41070028,
chr21:40143211-40145650~~chr21:41070818-41072228,
chr21:40143216-40145182~~chr21:40385497-40387239,
chr21:40143216-40145182~~chr21:41068067-41070302,
chr21:40143218-40145094~~chr21:40385505-40387214,
chr21:40143218-40145094~~chr21:41068097-41070414,
chr21:40143218-40145094~~chr21:41133240-41135091,
chr21:40143220-40145191~~chr21:41045017-41046620,
chr21:40143220-40145191~~chr21:41068083-41070648,
chr21:40143220-40145193~~chr21:40385428-40387263,
chr21:40143223-40145165~~chr21:40385500-40387251,
chr21:40143223-40145165~~chr21:41068145-41070397,
chr21:40143235-40145160~~chr21:40385101-40387258,
chr21:40143235-40145160~~chr21:40841024-40843128,
chr21:40143235-40145160~~chr21:41068042-41070202,
chr21:40143236-40145155~~chr21:40385794-40387196,
chr21:40143238-40145160~~chr21:41068059-41070286,
chr21:40143238-40145160~~chr21:41133234-41134735,
chr21:40143239-40145147~~chr21:41068073-41070024,
chr21:40143249-40145199~~chr21:41068260-41070064,
chr21:40143254-40145149~~chr21:40385829-40387199,
chr21:40143256-40145192~~chr21:40385428-40387257,
chr21:40143258-40145166~~chr21:40385841-40387219,
chr21:40143262-40144895~~chr21:41068445-41069912,
chr21:40143263-40145135~~chr21:40385795-40387254,
chr21:40143263-40145135~~chr21:40841259-40842961,
chr21:40143263-40145135~~chr21:41068059-41070218,
chr21:40143267-40144892~~chr21:41068032-41070376,
chr21:40143267-40144892~~chr21:41133281-41134757,
chr21:40143268-40144900~~chr21:40385471-40387249,
chr21:40143268-40144900~~chr21:41042582-41043894,
chr21:40143268-40144900~~chr21:41068052-41070078,
chr21:40143268-40144900~~chr21:41133210-41134770,
chr21:40143275-40144996~~chr21:41070881-41072256,
chr21:40143276-40145164~~chr21:41068061-41070317,
chr21:40143283-40145087~~chr21:41068113-41070021,
chr21:40143283-40145087~~chr21:41121049-41122875,
chr21:40143283-40145087~~chr21:41133208-41135081,
chr21:40143286-40144881~~chr21:41133185-41134897,
chr21:40143287-40145205~~chr21:41068185-41070081,
chr21:40143288-40144975~~chr21:41068410-41069966,
chr21:40143291-40145135~~chr21:41068238-41070028,
chr21:40143292-40144823~~chr21:41068564-41069996,
chr21:40143311-40145530~~chr21:41068080-41070453,
chr21:40143311-40145530~~chr21:41133270-41135110,
chr21:40143361-40144725~~chr21:41068534-41069892,
chr21:40143361-40144725~~chr21:41133411-41134824,
chr21:40143368-40144757~~chr21:41068035-41070009,
chr21:40143375-40144769~~chr21:41068498-41069899,
chr21:40143375-40144769~~chr21:41133440-41134760,
chr21:40143385-40144715~~chr21:41133301-41134874,
chr21:40143385-40144767~~chr21:41133283-41134768,
chr21:40143388-40144776~~chr21:41068509-41069855,
chr21:40143388-40144776~~chr21:41133401-41134738,
chr21:40145591-40147301~~chr21:40385508-40387221,
chr21:40150000-40175000~~chr21:40275000-40300000,
chr21:40150000-40175000~~chr21:40375000-40400000,
chr21:40150000-40175000~~chr21:40400000-40425000,
chr21:40150000-40175000~~chr21:40425000-40450000,
chr21:40150000-40175000~~chr21:40775000-40800000,
chr21:40150000-40175000~~chr21:40825000-40850000,
chr21:40150000-40175000~~chr21:40900000-40925000,
chr21:40150000-40175000~~chr21:41000000-41025000,
chr21:40150000-40175000~~chr21:41025000-41050000,
chr21:40150000-40175000~~chr21:41050000-41075000,
chr21:40150000-40175000~~chr21:41075000-41100000,
chr21:40173092-40174823~~chr21:40385428-40387263,
chr21:40173269-40174874~~chr21:40385101-40387258,
chr21:40175000-40200000~~chr21:40300000-40325000,
chr21:40175000-40200000~~chr21:40425000-40450000,
chr21:40175000-40200000~~chr21:40625000-40650000,
chr21:40175000-40200000~~chr21:40900000-40925000,
chr21:40175000-40200000~~chr21:40925000-40950000,
chr21:40175000-40200000~~chr21:41075000-41100000,
chr21:40175000-40200000~~chr21:41400000-41425000,
chr21:40275000-40300000~~chr21:40375000-40400000,
chr21:40300000-40325000~~chr21:40450000-40475000,
chr21:40300000-40325000~~chr21:40925000-40950000,
chr21:40325000-40350000~~chr21:40600000-40625000,
chr21:40325000-40350000~~chr21:40875000-40900000,
chr21:40325000-40350000~~chr21:41000000-41025000,
chr21:40425000-40450000~~chr21:40525000-40550000,
chr21:40425000-40450000~~chr21:40800000-40825000,
chr21:40425000-40450000~~chr21:40900000-40925000,
chr21:40425000-40450000~~chr21:41000000-41025000,
chr21:40425000-40450000~~chr21:41075000-41100000,
chr21:40450000-40475000~~chr21:40550000-40575000,
chr21:40450000-40475000~~chr21:40625000-40650000,
chr21:40450000-40475000~~chr21:40675000-40700000,
chr21:40450000-40475000~~chr21:40775000-40800000,
chr21:40450000-40475000~~chr21:40800000-40825000,
chr21:40450000-40475000~~chr21:40825000-40850000,
chr21:40450000-40475000~~chr21:40850000-40875000,
chr21:40450000-40475000~~chr21:40925000-40950000,
chr21:40450000-40475000~~chr21:41025000-41050000,
chr21:40450000-40475000~~chr21:41050000-41075000,
chr21:40450000-40475000~~chr21:41075000-41100000,
chr21:40450000-40475000~~chr21:41125000-41150000,
chr21:40450000-40475000~~chr21:41750000-41775000,
chr21:40465557-40467899~~chr21:40840912-40842965,
chr21:40465557-40467899~~chr21:41068145-41070397,
chr21:40465667-40468011~~chr21:40840995-40843250,
chr21:40465667-40468011~~chr21:41068097-41070414,
chr21:40465872-40468080~~chr21:40840988-40842938,
chr21:40465872-40468080~~chr21:41044806-41046966,
chr21:40466129-40468033~~chr21:40841024-40843128,
chr21:40466131-40467839~~chr21:40840989-40842899,
chr21:40466218-40467881~~chr21:40841049-40843350,
chr21:40466218-40467881~~chr21:41068068-41070387,
chr21:40466231-40468047~~chr21:40511598-40513386,
chr21:40466299-40467874~~chr21:41068067-41070302,
chr21:40466465-40467826~~chr21:40840980-40842929,
chr21:40466473-40467959~~chr21:41068059-41070218,
chr21:40466509-40467846~~chr21:41068098-41070028,
chr21:40475000-40500000~~chr21:40600000-40625000,
chr21:40475000-40500000~~chr21:40775000-40800000,
chr21:40475000-40500000~~chr21:40800000-40825000,
chr21:40475000-40500000~~chr21:40825000-40850000,
chr21:40475000-40500000~~chr21:41000000-41025000,
chr21:40475000-40500000~~chr21:41075000-41100000,
chr21:40475000-40500000~~chr21:46125000-46150000,
chr21:40504438-40505740~~chr21:40840988-40842938,
chr21:40511954-40513659~~chr21:41068067-41070302,
chr21:40525000-40550000~~chr21:40825000-40850000,
chr21:40525000-40550000~~chr21:41050000-41075000,
chr21:40575000-40600000~~chr21:40825000-40850000,
chr21:40575000-40600000~~chr21:41025000-41050000,
chr21:40575000-40600000~~chr21:41050000-41075000,
chr21:40578148-40579678~~chr21:40841367-40842877,
chr21:40600000-40625000~~chr21:40800000-40825000,
chr21:40600000-40625000~~chr21:40875000-40900000,
chr21:40600000-40625000~~chr21:41000000-41025000,
chr21:40625000-40650000~~chr21:41075000-41100000,
chr21:40650000-40675000~~chr21:41000000-41025000,
chr21:40650000-40675000~~chr21:41075000-41100000,
chr21:40675000-40700000~~chr21:40775000-40800000,
chr21:40675000-40700000~~chr21:40800000-40825000,
chr21:40700000-40725000~~chr21:40825000-40850000,
chr21:40700000-40725000~~chr21:41025000-41050000,
chr21:40700000-40725000~~chr21:41050000-41075000,
chr21:40718539-40720597~~chr21:41068151-41070181,
chr21:40718930-40720732~~chr21:41068068-41070387,
chr21:40718939-40720561~~chr21:41068151-41070172,
chr21:40718992-40720551~~chr21:41068042-41070202,
chr21:40719048-40720726~~chr21:41068096-41070184,
chr21:40719112-40720557~~chr21:41068059-41070218,
chr21:40719112-40720557~~chr21:41070922-41072244,
chr21:40719160-40720470~~chr21:41071015-41072298,
chr21:40719251-40720453~~chr21:41070979-41072230,
chr21:40725000-40750000~~chr21:41025000-41050000,
chr21:40725000-40750000~~chr21:41050000-41075000,
chr21:40750000-40775000~~chr21:40900000-40925000,
chr21:40750000-40775000~~chr21:40925000-40950000,
chr21:40775000-40800000~~chr21:40875000-40900000,
chr21:40775000-40800000~~chr21:41075000-41100000,
chr21:40775000-40800000~~chr21:41425000-41450000,
chr21:40800000-40825000~~chr21:40900000-40925000,
chr21:40800000-40825000~~chr21:41000000-41025000,
chr21:40800000-40825000~~chr21:41425000-41450000,
chr21:40825000-40850000~~chr21:41025000-41050000,
chr21:40825000-40850000~~chr21:41050000-41075000,
chr21:40833338-40835222~~chr21:41044725-41047059,
chr21:40840980-40842929~~chr21:41068151-41070172,
chr21:40841049-40843350~~chr21:41006848-41008091,
chr21:40841049-40843350~~chr21:41044725-41047059,
chr21:40841049-40843350~~chr21:41068068-41070387,
chr21:40841136-40842853~~chr21:41070891-41072415,
chr21:40841259-40842961~~chr21:41068059-41070218,
chr21:40841274-40842934~~chr21:41068185-41070081,
chr21:40846553-40848837~~chr21:41044731-41046662,
chr21:40846553-40848837~~chr21:41068042-41070202,
chr21:40846588-40848800~~chr21:41044806-41046966,
chr21:40846588-40848800~~chr21:41068046-41070192,
chr21:40850000-40875000~~chr21:40950000-40975000,
chr21:40850000-40875000~~chr21:41025000-41050000,
chr21:40850000-40875000~~chr21:41050000-41075000,
chr21:40850000-40875000~~chr21:41075000-41100000,
chr21:8750000-8775000~~chr21:40000000-40025000,
chr21:8750000-8775000~~chr21:40025000-40050000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE43070, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, ENCSR794RDS, 4DNFIBN9K4V9, ENCSR361AYD, GSE103148, 4DNFI7H4II2V, 4DNFIZ4F74QR, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, ENCSR113OIR, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, GSE99541, ENCSR668RDP, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, ENCSR658RQQ, ENCSR299VMZ, 4DNFI6XD6JAQ, 4DNFISPUVQHA, GSE116872, ENCSR527RXH, GSE105028, ENCSR833CMG, ENCSR033GUP, 4DNFIQWD8ZYD, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, 4DNFIB7QTIMH, ENCSR146FPM, 4DNFIOX3BGNE, ENCSR478BMT, GSE69643, 4DNFIBXWIH8J, 4DNFIJWBWE41, 4DNFICSTCJQZ, GSE155380, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE52457, 4DNFIBT4EAKN, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIX7H3CE2, ENCSR244BBG, ENCSR991JXX, 4DNFI9815EEJ, ENCSR778FXH, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIE8E4ANZ, GSE120294, 4DNFIW8TIFI5, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, ENCSR444BAR, 4DNFIL9M97T2, ENCSR550JLK, 4DNFIJ7OAIFQ, 4DNFIM2BMJ33, 4DNFIALNLR78, 4DNFIYDBBSE3, ENCSR386KHY, 4DNFIEJEFCAM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, ENCSR255XYX, ENCSR404HWQ, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, ENCSR094EIC, GSE58752, GSE116869, 4DNFI8649RQJ, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIILDWK8M, 4DNFI6EIFUZI, 4DNFII6AN691, GSE111537, GSE131580, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, ENCSR128RPG, 4DNFISTWNV9C, ENCSR228TUX, 4DNFIZF1KI43, 4DNFI8JFOAJT, 4DNFIQVMVRP6, 4DNFIC3HAU11, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI5LCW273, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence: MCF-10A
- Cohesin-DEGs, number of studies: 1
- Cohesin-DEGs, study: GSE154086
- Cohesin-DEGs, subunit: SA2$