Deatailed information for gene ENSG00000173638
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00013546
- Gene Symbol: SLC19A1
- Ensembl ID: ENSG00000173638
-
Gene locus: chr21:45514714-45563115
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs
- Regulatory cohesin (double-evidenced):
chr21-44320741-44336654,
chr21-44337821-44343795,
chr21-44344069-44346159,
chr21-44347920-44356379,
chr21-44974593-45005352,
chr21-45124436-45132048,
chr21-45132786-45143934,
chr21-45145219-45145603,
chr21-45145953-45146151,
chr21-45147401-45149408,
chr21-45276631-45278067,
chr21-45278276-45280924,
chr21-45281215-45285084,
chr21-45285295-45286241,
chr21-45286477-45297005,
chr21-45297393-45298845,
chr21-45299162-45312040,
chr21-45316533-45338135,
chr21-45339035-45339421,
chr21-45340328-45340876,
chr21-45341176-45342108,
chr21-45342847-45354233,
chr21-45503606-45519118,
chr21-45522806-45526243,
chr21-45526587-45546954,
chr21-45549108-45549455,
chr21-45549738-45561026,
chr21-45562524-45563196,
chr21-45589437-45600222,
chr21-45639143-45646446,
chr21-45699705-45700787,
chr21-45702015-45702584,
chr21-45703855-45705544,
chr21-45706323-45706700,
chr21-45708793-45710103,
chr21-45713326-45713848,
chr21-45721022-45721411,
chr21-45724221-45724921,
chr21-45750046-45750324,
chr21-45751051-45751215,
chr21-45751471-45751832,
chr21-45756056-45756358,
chr21-45761715-45762780,
chr21-45763067-45763913,
chr21-45764145-45764583,
chr21-45764836-45765653,
chr21-45766057-45770234,
chr21-45770613-45771399,
chr21-45778187-45779393,
chr21-45784287-45785692,
chr21-45786833-45787034,
chr21-45787287-45787779,
chr21-45788056-45788727,
chr21-45789051-45790732,
chr21-45791275-45792394,
chr21-45792750-45793603,
chr21-45796587-45797584,
chr21-45799954-45801669,
chr21-45801901-45802870,
chr21-45803374-45804235,
chr21-45804566-45806380,
chr21-45809423-45809839,
chr21-45810206-45810279,
chr21-45811128-45811479,
chr21-45812475-45812693,
chr21-45813685-45816501,
chr21-45816934-45824027,
chr21-45824560-45825827,
chr21-45826840-45830627,
chr21-45830839-45831391,
chr21-45831779-45832772,
chr21-45833478-45836709,
chr21-45837172-45837882,
chr21-45844115-45844699,
chr21-45845305-45846222,
chr21-45846697-45847005,
chr21-45847320-45849116,
chr21-45874401-45877128,
chr21-45877568-45881967,
chr21-45883995-45884251,
chr21-45885857-45888701,
chr21-45889019-45890378,
chr21-45891608-45894846,
chr21-45895276-45902934,
chr21-45905855-45907394,
chr21-45908410-45911399,
chr21-45911935-45913204,
chr21-45913451-45916964,
chr21-45917300-45917688,
chr21-45918949-45920374,
chr21-45921404-45925225,
chr21-45926057-45926739,
chr21-45927271-45927330,
chr21-45927607-45933291,
chr21-45933700-45935405,
chr21-45935980-45936491,
chr21-45937087-45942541,
chr21-45942760-45946249,
chr21-45947046-45949181,
chr21-45949436-45952197,
chr21-46094789-46101183,
chr21-46101525-46102239,
chr21-46107500-46107764,
chr21-46108827-46114343,
chr21-46114890-46141044,
-
Co-expression with cohesin genes Rho = 0.2996
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.302
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.832
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: H9-endodermal,IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,Keratinocytes192627,GM12892,K1,hTERT-HME1,H1-Mesenchymal,Olfactory,Hepatocyte-H9,MCF-7,HEK293T,GM12891,GM12878,MSiPS,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,LNCaP,SU-DHL-2,H9-hESC,KU-19-19,Primed-hESC,NCI-H1437,iPSC,REC-1,ARPE-19,HCT-116,Hep-G2,HT-1197,Kelly,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,U-937,HUES64,SU-DHL-4,HUVEC,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,Jurkat,CyT49-Gut,CC-2551,HAP1,HFF-hTERT
- Related loop:
chr21:27500000-27525000~~chr21:45550000-45575000,
chr21:44325000-44350000~~chr21:45500000-45525000,
chr21:44325000-44350000~~chr21:45525000-45550000,
chr21:44975000-45000000~~chr21:45500000-45525000,
chr21:45125000-45150000~~chr21:45500000-45525000,
chr21:45125000-45150000~~chr21:45525000-45550000,
chr21:45125000-45150000~~chr21:45550000-45575000,
chr21:45275000-45300000~~chr21:45550000-45575000,
chr21:45325000-45350000~~chr21:45500000-45525000,
chr21:45325000-45350000~~chr21:45550000-45575000,
chr21:45500000-45525000~~chr21:46100000-46125000,
chr21:45514977-45516574~~chr21:45540779-45543029,
chr21:45525000-45550000~~chr21:45800000-45825000,
chr21:45541155-45542449~~chr21:45817765-45819179,
chr21:45550000-45575000~~chr21:45700000-45725000,
chr21:45550000-45575000~~chr21:45750000-45775000,
chr21:45550000-45575000~~chr21:45775000-45800000,
chr21:45550000-45575000~~chr21:45800000-45825000,
chr21:45550000-45575000~~chr21:45825000-45850000,
chr21:45550000-45575000~~chr21:45875000-45900000,
chr21:45550000-45575000~~chr21:45900000-45925000,
chr21:45550000-45575000~~chr21:45925000-45950000,
chr21:45550000-45575000~~chr21:46100000-46125000,
chr21:45554040-45556961~~chr21:45595973-45597835,
chr21:45554040-45556961~~chr21:45819765-45821570,
chr21:45554054-45556956~~chr21:45595929-45597843,
chr21:45554054-45556956~~chr21:45819564-45821784,
chr21:45554057-45556932~~chr21:45819425-45821578,
chr21:45554068-45556963~~chr21:45819485-45821586,
chr21:45554068-45556963~~chr21:45922226-45924254,
chr21:45554081-45557001~~chr21:45595879-45597829,
chr21:45554081-45557001~~chr21:45818578-45821611,
chr21:45554102-45556956~~chr21:45595952-45597736,
chr21:45554102-45556956~~chr21:45817765-45819179,
chr21:45554102-45556956~~chr21:45819453-45821601,
chr21:45554102-45556956~~chr21:45879575-45881506,
chr21:45554110-45556838~~chr21:45595949-45597798,
chr21:45554116-45557239~~chr21:45595926-45597851,
chr21:45554116-45557239~~chr21:45818438-45821813,
chr21:45554116-45557239~~chr21:45879498-45881495,
chr21:45554117-45556938~~chr21:45817776-45821570,
chr21:45554119-45557159~~chr21:45595927-45597579,
chr21:45554119-45557159~~chr21:45768109-45769458,
chr21:45554119-45557159~~chr21:45819878-45821577,
chr21:45554119-45557159~~chr21:45922696-45924013,
chr21:45554143-45556979~~chr21:45595828-45597845,
chr21:45554143-45556979~~chr21:45819215-45821572,
chr21:45554152-45556956~~chr21:45595863-45597829,
chr21:45554175-45556950~~chr21:45596075-45597591,
chr21:45554175-45556950~~chr21:45817789-45819456,
chr21:45554175-45556950~~chr21:45819855-45821550,
chr21:45554175-45557619~~chr21:45595128-45597851,
chr21:45554175-45557619~~chr21:45818200-45821818,
chr21:45554175-45557619~~chr21:45921603-45924257,
chr21:45554177-45557278~~chr21:45595949-45597849,
chr21:45554177-45557278~~chr21:45819574-45821739,
chr21:45554177-45557278~~chr21:45879491-45881481,
chr21:45554195-45556971~~chr21:45595813-45597858,
chr21:45554195-45556971~~chr21:45819288-45821635,
chr21:45554195-45556971~~chr21:45922191-45924230,
chr21:45554202-45556971~~chr21:45595963-45597837,
chr21:45554202-45556971~~chr21:45817787-45821574,
chr21:45554208-45555627~~chr21:45819441-45821575,
chr21:45554214-45557007~~chr21:45595996-45597719,
chr21:45554214-45557007~~chr21:45819894-45821572,
chr21:45554223-45557030~~chr21:45596036-45597562,
chr21:45554223-45557030~~chr21:45818468-45819723,
chr21:45554223-45557030~~chr21:45819958-45821534,
chr21:45554236-45556906~~chr21:45596001-45597798,
chr21:45554237-45556867~~chr21:45595881-45597823,
chr21:45554237-45556867~~chr21:45819438-45821567,
chr21:45554237-45556867~~chr21:45922568-45924115,
chr21:45554245-45556897~~chr21:45595980-45597669,
chr21:45554245-45556897~~chr21:45819932-45821531,
chr21:45554248-45557000~~chr21:45595927-45597822,
chr21:45554248-45557000~~chr21:45819512-45821569,
chr21:45554252-45557219~~chr21:45595919-45597671,
chr21:45554252-45557219~~chr21:45819046-45821833,
chr21:45554265-45556926~~chr21:45595942-45597733,
chr21:45554269-45557151~~chr21:45595915-45597807,
chr21:45554270-45556959~~chr21:45595948-45597591,
chr21:45554270-45556959~~chr21:45818484-45821583,
chr21:45554270-45556959~~chr21:45879684-45881506,
chr21:45554282-45557370~~chr21:45595721-45597781,
chr21:45554282-45557370~~chr21:45817873-45821737,
chr21:45554287-45556966~~chr21:45642028-45644331,
chr21:45554287-45556968~~chr21:45590787-45592560,
chr21:45554287-45556968~~chr21:45596076-45597589,
chr21:45554287-45556968~~chr21:45817782-45819362,
chr21:45554287-45556968~~chr21:45819577-45821553,
chr21:45554290-45556966~~chr21:45595867-45597858,
chr21:45554290-45556966~~chr21:45819479-45821623,
chr21:45554290-45556966~~chr21:45922251-45924201,
chr21:45554297-45556971~~chr21:45595921-45597751,
chr21:45554297-45556971~~chr21:45817860-45821572,
chr21:45554297-45557117~~chr21:45596246-45597503,
chr21:45554297-45557117~~chr21:45817821-45819130,
chr21:45554297-45557117~~chr21:45819992-45821424,
chr21:45554301-45556961~~chr21:45818539-45821603,
chr21:45554301-45556961~~chr21:45879697-45881735,
chr21:45554301-45556971~~chr21:45595924-45597692,
chr21:45554301-45556971~~chr21:45818559-45821572,
chr21:45554314-45556966~~chr21:45819601-45821623,
chr21:45554315-45556912~~chr21:45596110-45597788,
chr21:45554317-45556991~~chr21:45596022-45597537,
chr21:45554319-45557073~~chr21:45596152-45597534,
chr21:45554319-45557073~~chr21:45819854-45821495,
chr21:45554322-45556956~~chr21:45595973-45597752,
chr21:45554322-45556956~~chr21:45817794-45819025,
chr21:45554322-45556956~~chr21:45819758-45821568,
chr21:45554329-45556937~~chr21:45819576-45821583,
chr21:45554331-45556939~~chr21:45818525-45821578,
chr21:45554337-45556942~~chr21:45879710-45881470,
chr21:45554345-45557074~~chr21:45596127-45597522,
chr21:45554345-45557074~~chr21:45820016-45821418,
chr21:45554350-45556959~~chr21:45595979-45597730,
chr21:45554359-45556990~~chr21:45595975-45597766,
chr21:45554359-45556990~~chr21:45819186-45821572,
chr21:45554362-45557128~~chr21:45819877-45821487,
chr21:45554367-45557069~~chr21:45817841-45819035,
chr21:45554367-45557069~~chr21:45819916-45821488,
chr21:45554367-45557069~~chr21:45879927-45881351,
chr21:45554407-45556897~~chr21:45595171-45597684,
chr21:45554407-45556897~~chr21:45819894-45821519,
chr21:45554407-45556976~~chr21:45595965-45597845,
chr21:45554407-45556976~~chr21:45819554-45821538,
chr21:45554441-45556961~~chr21:45595981-45597772,
chr21:45554441-45556961~~chr21:45819757-45821509,
chr21:45554476-45556827~~chr21:45820082-45821363,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
GSE95015, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, ENCSR794RDS, 4DNFIBN9K4V9, ENCSR852KQC, ENCSR361AYD, 4DNFIDSWKFF5, GSE103148, 4DNFIZ4F74QR, ENCSR350NJV, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, ENCSR113OIR, GSE99541, ENCSR668RDP, GSE97394, 4DNFICEGAHRC, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFIJ5DQZVK, ENCSR658RQQ, ENCSR299VMZ, 4DNFIK61ILGM, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, ENCSR000FDB, 4DNFI7XAZNNQ, ENCSR527RXH, GSE105028, ENCSR833CMG, ENCSR033GUP, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, 4DNFIB7QTIMH, GSE126792, ENCSR146FPM, ENCSR478BMT, GSE69643, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, GSE52457, 4DNFIBT4EAKN, Direct, ENCSR314HAC, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9815EEJ, ENCSR778FXH, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDZT7PR8, 4DNFIZGCA8AH, 4DNFIH7TH4MF, ENCSR194SRI, 4DNFIR8OU6QJ, 4DNFI5CGQ46V, GSE120294, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIFHU75I5, 4DNFIYD8LO9Z, ENCSR444BAR, ENCSR123UVP, 4DNFIL9M97T2, ENCSR550JLK, 4DNFI3A3VYWU, 4DNFIJ7OAIFQ, 4DNFIX4PJKXZ, GSE165038, 4DNFIALNLR78, 4DNFIYDBBSE3, ENCSR386KHY, ENCSR379CII, 4DNFIEJEFCAM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, ENCSR255XYX, ENCSR404HWQ, 4DNFIJ8JKKWJ, 4DNFIDKJFK2S, ENCSR933UZH, ENCSR094EIC, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR866FWQ, 4DNFII6AN691, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, ENCSR752QCX, ENCSR128RPG, 4DNFISTWNV9C, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFIOCW5AEM, 4DNFIC3HAU11, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI5LCW273, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: MCF-7,HCT116-mAID,HPC,P3HR-1,K-562,MCF-10A,Keratinocytes
- Cohesin-DEGs, number of studies: 8
- Cohesin-DEGs, study: GSE83870,GSE140651,GSE177045,GSE101921,GSE119828,GSE131448,GSE106886
- Cohesin-DEGs, subunit: CdLS,SMC1,Rad21,SA2