Deatailed information for gene ENSG00000177692
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00014340
- Gene Symbol: DNAJC28
- Ensembl ID: ENSG00000177692
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Gene locus: chr21:33485529-33491473
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
chr21-33195338-33206151,
chr21-33477518-33481114,
chr21-33481535-33482250,
chr21-33484533-33485150,
chr21-33485751-33486019,
chr21-33486307-33486701,
chr21-33487317-33487983,
chr21-33489646-33490713,
chr21-33490969-33492642,
chr21-33492915-33493836,
chr21-33494258-33494926,
chr21-33495789-33496617,
chr21-33892684-33896819,
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Co-expression with cohesin genes Rho = 0.2272
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.378
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.756
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: iPSC,Hep-G2,H1-hESC,HFFc6,SU-DHL-2,HeLa-S3,hTERT-HME1,SU-DHL-4
- Related loop:
chr21:27500000-27525000~~chr21:33475000-33500000,
chr21:33199071-33200963~~chr21:33478656-33481090,
chr21:33478460-33481029~~chr21:33894201-33895840,
chr21:33478501-33481049~~chr21:33490733-33492612,
chr21:33478624-33481448~~chr21:33894294-33895564,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
ENCSR128RPG, ENCSR991JXX, 4DNFIQYQWPF5, ENCSR658RQQ, 4DNFI5LCW273, 4DNFI2J1ODWB, Direct, 4DNFIMROE6N4, 4DNFIFLJLIS5, 4DNFICEGAHRC, 4DNFI5SUHCGZ, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, 4DNFIIMZB6Y9, 4DNFIVSCH2CH
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence: CMK,P3HR-1
- Cohesin-DEGs, number of studies: 2
- Cohesin-DEGs, study: GSE140651,GSE154086
- Cohesin-DEGs, subunit: SMC1,SA2$