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Basic information

CohesinDB ID: CDBG00014479

Gene Symbol: LINC00314

Ensembl ID: ENSG00000178457

Gene locus: chr21:28013362-28023233 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0762 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.913
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,Keratinocytes192627,K1,H1-Mesenchymal,Olfactory,SARS-Cov2-olfactory,GM12878,K-562,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,KU-19-19,HCT-116,Hep-G2,H1-hESC,CyT49-hESC,RT-112,CyT49-endoderm,KBM-7,CyT49-Gut,CC-2551,HAP1,HFF-hTERT

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIQWD8ZYD, 4DNFI8649RQJ, 4DNFIQYQWPF5, 4DNFI3CFMRID, 4DNFIWZEN3FF, 4DNFIDJ2JZ7Q, 4DNFIMROE6N4, 4DNFIE8E4ANZ, 4DNFI5SUHCGZ, ENCSR852KQC, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIW8TIFI5, 4DNFIMEG1QIC, 4DNFIEYQ5ZIR, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIA6NSSBJ, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, ENCSR668RDP, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFICEGAHRC, 4DNFIIMZB6Y9, 4DNFIL9M97T2, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, ENCSR128RPG, 4DNFIJBJ6QVH, GSE52457, 4DNFIM2BMJ33, Direct, ENCSR314HAC, 4DNFISPUVQHA, 4DNFIX7H3CE2, 4DNFIYDBBSE3, 4DNFI1UEG1HD, 4DNFIEJEFCAM, 4DNFI9815EEJ, 4DNFIQVMVRP6, ENCSR404HWQ, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, 4DNFIP71EWXC, 4DNFIFLJLIS5, 4DNFILIM6FDL, 4DNFIDZT7PR8, 4DNFINEQY95T, 4DNFIQ2687RT, 4DNFIS5F6EBL, GSE105028, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIT96Z365

Cohesin-loop subunit: Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

Tools:

Assay

refGene

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LINC00314 gene locus

LINC00314 related cohesin sites

LINC00314 related cohesin loop

Deatailed information for gene ENSG00000178457

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