Deatailed information for gene ENSG00000180509
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00014865
- Gene Symbol: KCNE1
- Ensembl ID: ENSG00000180509
-
Gene locus: chr21:34446689-34512210
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.1482
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.705
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,Right-Ventricle,Keratinocytes192627,Aorta,GM12892,K1,hTERT-HME1,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,GM19239,HEK293T,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,MSiPS,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,H1-Trophectoderm,SU-DHL-2,H9-hESC,Primed-hESC,NCI-H1437,iPSC,Liver,ARPE-19,HCT-116,OCI-AML-3,REC-1,Hep-G2,HT-1197,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,NaiveB,U-937,BMEC,HUES64,SU-DHL-4,CyT49-hESC,HUVEC,HL-60,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,Left-Ventricle,KBM-7,CC-2551,CyT49-Gut,HAP1,HFF-hTERT,MCF7-FASR,Neutrophil
- Related loop:
chr21:14975000-15000000~~chr21:34500000-34525000,
chr21:32375000-32400000~~chr21:34500000-34525000,
chr21:33675000-33700000~~chr21:34500000-34525000,
chr21:33900000-33925000~~chr21:34500000-34525000,
chr21:33950000-33975000~~chr21:34500000-34525000,
chr21:34025000-34050000~~chr21:34500000-34525000,
chr21:34050000-34075000~~chr21:34500000-34525000,
chr21:34175000-34200000~~chr21:34500000-34525000,
chr21:34225000-34250000~~chr21:34500000-34525000,
chr21:34250000-34275000~~chr21:34500000-34525000,
chr21:34300000-34325000~~chr21:34500000-34525000,
chr21:34325000-34350000~~chr21:34500000-34525000,
chr21:34350000-34375000~~chr21:34500000-34525000,
chr21:34500000-34525000~~chr21:34600000-34625000,
chr21:34500000-34525000~~chr21:34625000-34650000,
chr21:34500000-34525000~~chr21:34850000-34875000,
chr21:34500000-34525000~~chr21:34875000-34900000,
chr21:34500000-34525000~~chr21:35025000-35050000,
chr21:34500000-34525000~~chr21:35600000-35625000,
chr21:34500000-34525000~~chr21:35825000-35850000,
chr21:34500000-34525000~~chr21:35925000-35950000,
chr21:34500000-34525000~~chr21:35950000-35975000,
chr21:34500000-34525000~~chr21:36025000-36050000,
chr21:34508569-34511502~~chr21:34543343-34545597,
chr21:34508611-34511592~~chr21:34582165-34583641,
chr21:34508611-34511592~~chr21:34602342-34604182,
chr21:34508615-34511741~~chr21:34581754-34584168,
chr21:34508615-34511741~~chr21:34602083-34604469,
chr21:34508615-34511741~~chr21:34629492-34631931,
chr21:34508625-34511759~~chr21:34602034-34604261,
chr21:34508630-34511686~~chr21:34581785-34584141,
chr21:34508630-34511686~~chr21:34602101-34604451,
chr21:34508630-34511686~~chr21:34629744-34631944,
chr21:34508642-34511774~~chr21:34602014-34604415,
chr21:34508649-34511612~~chr21:34581736-34583658,
chr21:34508649-34511612~~chr21:34602089-34603843,
chr21:34508650-34511829~~chr21:34581759-34584645,
chr21:34508650-34511829~~chr21:34601700-34604436,
chr21:34508652-34511719~~chr21:34581526-34583641,
chr21:34508652-34511719~~chr21:34601693-34604449,
chr21:34508655-34511778~~chr21:34581832-34584557,
chr21:34508655-34511778~~chr21:34601712-34604382,
chr21:34508655-34511778~~chr21:34629535-34631912,
chr21:34508676-34511542~~chr21:34582256-34583632,
chr21:34508676-34511542~~chr21:34602331-34604108,
chr21:34508680-34511707~~chr21:34581775-34584106,
chr21:34508680-34511707~~chr21:34602032-34604402,
chr21:34508680-34511707~~chr21:34629707-34631944,
chr21:34508685-34511696~~chr21:34602075-34604337,
chr21:34508686-34511802~~chr21:34581746-34584166,
chr21:34508686-34511802~~chr21:34601682-34604464,
chr21:34508701-34511712~~chr21:34601764-34604306,
chr21:34508705-34511720~~chr21:34581803-34583823,
chr21:34508705-34511720~~chr21:34602198-34604029,
chr21:34508719-34511659~~chr21:34581890-34583607,
chr21:34508750-34512867~~chr21:34543315-34545088,
chr21:34508750-34512867~~chr21:34582003-34583678,
chr21:34508750-34512867~~chr21:34602325-34604285,
chr21:34508753-34511486~~chr21:34582204-34583628,
chr21:34508753-34511486~~chr21:34602350-34604114,
chr21:34508768-34511838~~chr21:34602064-34604440,
chr21:34508793-34511654~~chr21:34543206-34545079,
chr21:34508793-34511654~~chr21:34581884-34584059,
chr21:34508793-34511654~~chr21:34602357-34604365,
chr21:34508793-34511654~~chr21:34614521-34616227,
chr21:34508793-34511654~~chr21:34629528-34631714,
chr21:34509466-34511758~~chr21:34582034-34583637,
chr21:34509466-34511758~~chr21:34602015-34604174,
chr21:34509521-34511696~~chr21:34581875-34583641,
chr21:34509540-34511703~~chr21:34543212-34545232,
chr21:34509540-34511703~~chr21:34581325-34584001,
chr21:34509540-34511703~~chr21:34601696-34604437,
chr21:34509547-34511623~~chr21:34601692-34604188,
chr21:34509547-34511623~~chr21:34629718-34631638,
chr21:34509573-34511708~~chr21:34581787-34584086,
chr21:34509573-34511708~~chr21:34602341-34603855,
chr21:34509741-34511700~~chr21:34582016-34584092,
chr21:34509752-34511516~~chr21:34582035-34584113,
chr21:34509783-34511605~~chr21:34602384-34603907,
chr21:34509872-34511601~~chr21:34582033-34583700,
chr21:34509887-34511738~~chr21:34581871-34583664,
chr21:34509908-34511636~~chr21:34602396-34603921,
chr21:34509916-34511507~~chr21:34543244-34545036,
chr21:34509928-34511624~~chr21:34602405-34603834,
chr21:34509944-34511541~~chr21:34582165-34583659,
chr21:34509944-34511541~~chr21:34602207-34604502,
chr21:34509944-34511541~~chr21:34629772-34631610,
chr21:34509968-34511655~~chr21:34602437-34604130,
chr21:34509993-34511503~~chr21:34582193-34583617,
chr21:34509993-34511503~~chr21:34602179-34603959,
chr21:34510017-34511458~~chr21:34602553-34604118,
chr21:34510017-34511489~~chr21:34602303-34604338,
chr21:34510026-34511585~~chr21:34602009-34603991,
chr21:34510042-34511475~~chr21:34602457-34604206,
chr21:34516834-34518581~~chr21:34581775-34584106,
chr21:34516916-34518686~~chr21:34581803-34583823,
chr21:34516916-34518686~~chr21:34602198-34604029,
chr21:34517019-34518429~~chr21:34582165-34583659,
chr21:34517021-34518393~~chr21:34543343-34545597,
chr21:34517056-34518483~~chr21:34581736-34583658,
chr21:34517122-34518298~~chr21:34543212-34545232,
chr21:7800000-7825000~~chr21:34425000-34450000,
chr21:7800000-7825000~~chr21:34450000-34475000,
chr21:7800000-7825000~~chr21:34500000-34525000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, GSE43070, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, 4DNFIBN9K4V9, ENCSR852KQC, 4DNFIDSWKFF5, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, 4DNFIKYXMF1E, 4DNFIWNNO89O, 4DNFIRKGMZRQ, GSE99541, ENCSR668RDP, 4DNFIL5K3MA1, 4DNFIS3DIH4V, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, ENCSR658RQQ, ENCSR299VMZ, 4DNFI6XD6JAQ, GSE108869, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, ENCSR000FDB, ENCSR527RXH, GSE105028, ENCSR833CMG, 4DNFIBKZK63V, ENCSR033GUP, 4DNFIQWD8ZYD, GSE87112, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, 4DNFIB7QTIMH, 4DNFISNGDB53, ENCSR146FPM, GSE69643, 4DNFIBXWIH8J, 4DNFIJWBWE41, 4DNFICSTCJQZ, GSE155380, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, GSE52457, 4DNFIBT4EAKN, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIAS8LV1C, 4DNFIV56OFE3, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9815EEJ, ENCSR778FXH, 4DNFIYJ4TWB8, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIH2A7IKF, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIBRSIPE4, 4DNFI6CWNUFL, 4DNFI5CGQ46V, 4DNFIR8OU6QJ, 4DNFIE8E4ANZ, GSE120294, GSE84022, 4DNFIPV5KFMK, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIXU2KPNQ, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIFHU75I5, 4DNFIL9M97T2, 4DNFIJBJ6QVH, 4DNFI3A3VYWU, ENCSR637QCS, 4DNFIJ7OAIFQ, 4DNFIM2BMJ33, GSE165038, 4DNFIALNLR78, 4DNFIBY3UHJB, 4DNFIYDBBSE3, ENCSR386KHY, ENCSR379CII, 4DNFIEJEFCAM, 4DNFIQRTP7NM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, GSE48592, ENCSR255XYX, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, ENCSR094EIC, GSE58752, ENCSR507AHE, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, GSE126756, 4DNFIILDWK8M, 4DNFIP25GZGA, ENCSR866FWQ, 4DNFIBCIA62Q, 4DNFII6AN691, GSE111537, GSE131580, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, 4DNFIOUSETUP, ENCSR752QCX, ENCSR128RPG, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFIZF1KI43, 4DNFI8JFOAJT, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI5LCW273, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFILIM6FDL, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence: CordBlood
- Cohesin-DEGs, number of studies: 1
- Cohesin-DEGs, study: GSE73224
- Cohesin-DEGs, subunit: Rad21