Deatailed information for gene ENSG00000182093
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00015149
- Gene Symbol: GET1
- Ensembl ID: ENSG00000182093
-
Gene locus: chr21:39380367-39428481
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs,
- Regulatory cohesin (double-evidenced):
chr21-38498193-38500425,
chr21-38501041-38501534,
chr21-38503073-38508323,
chr21-38509890-38510117,
chr21-38510943-38512229,
chr21-38512754-38513121,
chr21-38519985-38520039,
chr21-38520552-38520872,
chr21-38524127-38524519,
chr21-38524820-38525118,
chr21-38576611-38576930,
chr21-38577420-38578130,
chr21-38579596-38580252,
chr21-38581777-38582078,
chr21-38587293-38587727,
chr21-38591359-38594057,
chr21-38596343-38596638,
chr21-38597537-38597765,
chr21-38599047-38599490,
chr21-38750928-38753320,
chr21-38755256-38758111,
chr21-38758589-38759179,
chr21-38759468-38760630,
chr21-38761727-38762289,
chr21-38762803-38763102,
chr21-38764079-38764735,
chr21-38765117-38765356,
chr21-38766557-38767917,
chr21-38768383-38770086,
chr21-38771502-38771829,
chr21-38772380-38772727,
chr21-38772940-38775249,
chr21-38775576-38776072,
chr21-38780320-38781238,
chr21-38782672-38782927,
chr21-38784001-38785207,
chr21-38785970-38786654,
chr21-38786892-38788876,
chr21-38789235-38790110,
chr21-38793941-38799351,
chr21-38800466-38816528,
chr21-38816889-38818881,
chr21-38819201-38823342,
chr21-38823665-38827360,
chr21-38849471-38854263,
chr21-38856453-38857719,
chr21-38858525-38859524,
chr21-38859766-38860539,
chr21-38861132-38861513,
chr21-38862000-38863279,
chr21-38864066-38864405,
chr21-38867234-38867512,
chr21-38869262-38870389,
chr21-38872690-38873110,
chr21-38873491-38873832,
chr21-38874324-38875151,
chr21-38902877-38915813,
chr21-38916103-38918039,
chr21-38918470-38919889,
chr21-38920487-38927328,
chr21-38927606-38928109,
chr21-38929045-38929452,
chr21-38930541-38932324,
chr21-38933315-38934329,
chr21-38934867-38935136,
chr21-38936897-38937530,
chr21-38937871-38939705,
chr21-38940267-38940553,
chr21-38942437-38943594,
chr21-38943990-38947249,
chr21-38947518-38949339,
chr21-38999239-39001723,
chr21-39002157-39005860,
chr21-39006216-39008144,
chr21-39009600-39010167,
chr21-39010386-39017610,
chr21-39018454-39019370,
chr21-39019594-39020196,
chr21-39020597-39024249,
chr21-39024973-39026738,
chr21-39151590-39151880,
chr21-39153009-39153827,
chr21-39156042-39156407,
chr21-39156653-39158153,
chr21-39158424-39158895,
chr21-39159537-39161498,
chr21-39171426-39171861,
chr21-39172222-39172621,
chr21-39173429-39176751,
chr21-39178845-39179222,
chr21-39180628-39180930,
chr21-39181962-39185522,
chr21-39189884-39190456,
chr21-39203404-39203730,
chr21-39204248-39204463,
chr21-39205366-39206009,
chr21-39208500-39209259,
chr21-39214963-39215242,
chr21-39215761-39216148,
chr21-39219118-39219418,
chr21-39221650-39221894,
chr21-39224700-39225233,
chr21-39227967-39228342,
chr21-39230638-39230782,
chr21-39233710-39233982,
chr21-39235801-39236518,
chr21-39244018-39244348,
chr21-39246748-39247115,
chr21-39249901-39249966,
chr21-39277603-39278116,
chr21-39281318-39282039,
chr21-39289740-39290081,
chr21-39295098-39295553,
chr21-39301995-39302301,
chr21-39303859-39304491,
chr21-39305444-39305836,
chr21-39306051-39306835,
chr21-39308133-39308430,
chr21-39308844-39309885,
chr21-39311213-39311463,
chr21-39311834-39323454,
chr21-39323856-39324540,
chr21-39326856-39327201,
chr21-39328143-39328508,
chr21-39329775-39330179,
chr21-39330451-39330860,
chr21-39332176-39332684,
chr21-39333291-39334572,
chr21-39335104-39335948,
chr21-39336590-39337662,
chr21-39338003-39338994,
chr21-39339920-39340238,
chr21-39342069-39342466,
chr21-39343271-39343467,
chr21-39343962-39344240,
chr21-39344676-39351972,
chr21-39372448-39374699,
chr21-39377536-39378376,
chr21-39378615-39382320,
chr21-39383016-39384062,
chr21-39384730-39386685,
chr21-39386888-39390967,
chr21-39395561-39395853,
chr21-39396172-39397021,
chr21-39398076-39398420,
chr21-39398702-39399019,
chr21-39402135-39402399,
chr21-39403382-39403965,
chr21-39404418-39404728,
chr21-39405210-39405509,
chr21-39409531-39409809,
chr21-39412553-39413050,
chr21-39413873-39414796,
chr21-39417782-39417992,
chr21-39419242-39419515,
chr21-39420248-39420774,
chr21-39421127-39421401,
chr21-39422232-39423256,
chr21-39424092-39424501,
chr21-39425591-39426058,
chr21-39427352-39427664,
chr21-39430503-39430780,
chr21-39431574-39431827,
chr21-39625225-39625791,
chr21-39629704-39632293,
chr21-39632853-39634794,
chr21-39636297-39636947,
chr21-39637455-39637794,
chr21-39638015-39640435,
chr21-39641876-39642112,
chr21-39642413-39642648,
chr21-39643132-39643834,
chr21-39644110-39644390,
chr21-39647406-39650769,
chr21-39699714-39700227,
chr21-39701576-39703321,
chr21-39704596-39707757,
chr21-39709616-39710268,
chr21-39710803-39711977,
chr21-39712178-39719074,
chr21-39720460-39720773,
chr21-39721276-39722005,
chr21-39723416-39724008,
-
Co-expression with cohesin genes Rho = 0.5797
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.312
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.893
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,TAMR-MCF7,GM12892,K1,Hepatocyte-H9,MCF-7,HEK293T,GM12891,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,H1-Trophectoderm,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,Liver,ARPE-19,HCT-116,Hep-G2,HT-1197,H1-hESC,HT-1376,MSLCL,U-937,SU-DHL-4,Skin-Fibroblast,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:34350000-34375000~~chr21:39375000-39400000,
chr21:38500000-38525000~~chr21:39375000-39400000,
chr21:38575000-38600000~~chr21:39375000-39400000,
chr21:38750000-38775000~~chr21:39375000-39400000,
chr21:38775000-38800000~~chr21:39375000-39400000,
chr21:38800000-38825000~~chr21:39375000-39400000,
chr21:38800000-38825000~~chr21:39425000-39450000,
chr21:38850000-38875000~~chr21:39400000-39425000,
chr21:38900000-38925000~~chr21:39375000-39400000,
chr21:38925000-38950000~~chr21:39375000-39400000,
chr21:39000000-39025000~~chr21:39375000-39400000,
chr21:39000000-39025000~~chr21:39425000-39450000,
chr21:39150000-39175000~~chr21:39375000-39400000,
chr21:39175000-39200000~~chr21:39375000-39400000,
chr21:39175000-39200000~~chr21:39400000-39425000,
chr21:39175000-39200000~~chr21:39425000-39450000,
chr21:39181797-39184674~~chr21:39387575-39389929,
chr21:39181825-39184679~~chr21:39387575-39389540,
chr21:39182329-39184669~~chr21:39379584-39381389,
chr21:39182808-39184692~~chr21:39387267-39389644,
chr21:39200000-39225000~~chr21:39375000-39400000,
chr21:39200000-39225000~~chr21:39400000-39425000,
chr21:39200000-39225000~~chr21:39425000-39450000,
chr21:39225000-39250000~~chr21:39375000-39400000,
chr21:39225000-39250000~~chr21:39400000-39425000,
chr21:39225000-39250000~~chr21:39425000-39450000,
chr21:39275000-39300000~~chr21:39375000-39400000,
chr21:39275000-39300000~~chr21:39400000-39425000,
chr21:39300000-39325000~~chr21:39400000-39425000,
chr21:39300000-39325000~~chr21:39425000-39450000,
chr21:39311821-39314792~~chr21:39387238-39389498,
chr21:39311959-39313102~~chr21:39387388-39389691,
chr21:39313200-39315343~~chr21:39387575-39389929,
chr21:39313201-39315232~~chr21:39387637-39389565,
chr21:39313213-39315341~~chr21:39387404-39390232,
chr21:39313217-39315223~~chr21:39387388-39389691,
chr21:39313225-39315438~~chr21:39387253-39389877,
chr21:39313233-39315495~~chr21:39387267-39389644,
chr21:39313238-39315302~~chr21:39387310-39389980,
chr21:39313242-39315444~~chr21:39387521-39389890,
chr21:39313251-39315395~~chr21:39387315-39389934,
chr21:39313256-39315329~~chr21:39387268-39389940,
chr21:39313256-39315481~~chr21:39387441-39389598,
chr21:39313266-39314748~~chr21:39387578-39389687,
chr21:39313272-39315384~~chr21:39387528-39389909,
chr21:39313277-39315384~~chr21:39387326-39389699,
chr21:39313325-39314705~~chr21:39387024-39389430,
chr21:39313325-39315275~~chr21:39387259-39389666,
chr21:39313366-39315422~~chr21:39387902-39389468,
chr21:39325000-39350000~~chr21:39425000-39450000,
chr21:39335976-39337473~~chr21:39387323-39389534,
chr21:39336013-39337477~~chr21:39387504-39389563,
chr21:39347365-39350526~~chr21:39387267-39389644,
chr21:39347651-39350709~~chr21:39387578-39389687,
chr21:39372709-39374761~~chr21:39387355-39389610,
chr21:39372834-39374834~~chr21:39387326-39389699,
chr21:39372912-39374798~~chr21:39387504-39389563,
chr21:39372914-39374485~~chr21:39387578-39389687,
chr21:39372946-39374777~~chr21:39387278-39389675,
chr21:39372954-39374915~~chr21:39387521-39389734,
chr21:39373048-39374478~~chr21:39387575-39389540,
chr21:39373064-39374576~~chr21:39387323-39389534,
chr21:39373100-39374555~~chr21:39387268-39389940,
chr21:39375000-39400000~~chr21:39625000-39650000,
chr21:39400000-39425000~~chr21:39700000-39725000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFI3CFMRID, ENCSR662QKG, GSE95015, 4DNFIHMCILEN, 4DNFIWZEN3FF, 4DNFIBRSIPE4, GSE43070, 4DNFIDJ2JZ7Q, GSE118716, 4DNFIMROE6N4, ENCSR499RVD, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, GSE108787, ENCSR146FPM, 4DNFI7H4II2V, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIP25GZGA, ENCSR732QOH, 4DNFIBM714BP, 4DNFIYD8LO9Z, GSE99541, ENCSR668RDP, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, ENCSR123UVP, ENCSR587DSF, ENCSR452NHL, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, ENCSR128RPG, 4DNFI9YAVTI1, GSE52457, GSE80820, 4DNFI3A3VYWU, ENCSR658RQQ, 4DNFIM2BMJ33, ENCSR299VMZ, ENCSR314HAC, Direct, 4DNFI6XD6JAQ, 4DNFIAS8LV1C, 4DNFISPUVQHA, ENCSR386KHY, 4DNFI1UEG1HD, 4DNFI6JJQKFJ, 4DNFI8Y9SRP2, 4DNFII84FBKM, 4DNFIK61ILGM, 4DNFIYIAUEPW, ENCSR244BBG, GSE165038, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, 4DNFIQVMVRP6, ENCSR255XYX, ENCSR000FDB, ENCSR404HWQ, ENCSR110JOO, ENCSR338WUS, 4DNFI9ZWZ5BS, 4DNFIE5TEYK7, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, ENCSR833CMG, 4DNFIDBIEXI7, 4DNFIP71EWXC, 4DNFIZGCA8AH, GSE105028, GSE58752, ENCSR033GUP
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: HCT116-mAID,SLK,P3HR-1,K-562,MCF-10A,HAP1
- Cohesin-DEGs, number of studies: 7
- Cohesin-DEGs, study: GSE140651,GSE101921,GSE126635,GSE131448,GSE138937,GSE106886
- Cohesin-DEGs, subunit: CTCF,SMC1,Rad21,SA2