Deatailed information for gene ENSG00000182240
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00015187
- Gene Symbol: BACE2
- Ensembl ID: ENSG00000182240
-
Gene locus: chr21:41167800-41282518
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs,
- Regulatory cohesin (double-evidenced):
chr21-40884513-40884831,
chr21-40886946-40887353,
chr21-40888245-40888532,
chr21-40908251-40908546,
chr21-40909892-40910447,
chr21-40913070-40913480,
chr21-40917173-40917620,
chr21-40919272-40920574,
chr21-40920797-40921508,
chr21-40932779-40933193,
chr21-40936639-40937196,
chr21-40947904-40948058,
chr21-41075452-41076905,
chr21-41085108-41085434,
chr21-41089578-41089986,
chr21-41091092-41091871,
chr21-41120392-41124044,
chr21-41165212-41165810,
chr21-41166931-41172082,
chr21-41173473-41173655,
chr21-41177726-41178272,
chr21-41179066-41179600,
chr21-41186135-41187378,
chr21-41196787-41197468,
chr21-41199133-41199869,
chr21-41200720-41201085,
chr21-41203279-41204508,
chr21-41207311-41209537,
chr21-41213457-41213771,
chr21-41214800-41215219,
chr21-41216467-41217270,
chr21-41217596-41218016,
chr21-41218863-41219208,
chr21-41219451-41220069,
chr21-41221113-41223031,
chr21-41223341-41223563,
chr21-41224862-41225153,
chr21-41235811-41236966,
chr21-41237171-41237412,
chr21-41238064-41238455,
chr21-41240160-41240667,
chr21-41240969-41241895,
chr21-41244857-41244914,
chr21-41245248-41246129,
chr21-41247071-41252707,
chr21-41253267-41253528,
chr21-41254307-41254613,
chr21-41254834-41255643,
chr21-41259960-41260770,
chr21-41266571-41267345,
chr21-41273324-41273444,
chr21-41279309-41286918,
chr21-41287349-41287624,
chr21-41289470-41289790,
chr21-41290198-41290717,
chr21-41291671-41292309,
chr21-41295717-41296311,
chr21-41349571-41350286,
chr21-41350528-41350953,
chr21-41351402-41351758,
chr21-41351961-41352359,
chr21-41355172-41355403,
chr21-41356031-41356141,
chr21-41357146-41357972,
chr21-41358175-41363229,
chr21-41363511-41364777,
chr21-41365610-41366077,
chr21-41366312-41368581,
chr21-41368785-41370859,
chr21-41373113-41380866,
chr21-41381134-41381620,
chr21-41381847-41383678,
chr21-41386568-41386813,
chr21-41387809-41388751,
chr21-41388985-41389586,
chr21-41390040-41391268,
chr21-41392802-41395480,
chr21-41396219-41397986,
chr21-41399454-41400168,
chr21-41409832-41412348,
chr21-41425596-41431302,
chr21-41431562-41433383,
chr21-41433595-41438072,
chr21-41438421-41440223,
chr21-41440635-41442106,
chr21-41442477-41454571,
chr21-41454845-41457031,
chr21-41457310-41463776,
chr21-41465279-41466074,
chr21-41466276-41469670,
chr21-41470417-41471816,
chr21-41472869-41473818,
chr21-41474341-41474869,
chr21-41499971-41502531,
chr21-41504215-41505004,
chr21-41505347-41509529,
chr21-41509897-41510115,
chr21-41510454-41511185,
chr21-41511910-41512243,
chr21-41512550-41513397,
chr21-41518109-41518579,
chr21-41520133-41522085,
chr21-41523158-41523411,
chr21-41524547-41525042,
chr21-41525661-41526249,
chr21-41526686-41527137,
chr21-41527940-41528857,
chr21-41529157-41529613,
chr21-41529914-41531492,
chr21-41531709-41531968,
chr21-41533651-41533917,
chr21-41535720-41537183,
chr21-41537437-41538094,
chr21-41539474-41540152,
chr21-41541451-41541829,
chr21-41544162-41544406,
chr21-41546008-41546302,
chr21-41547101-41547423,
chr21-41548755-41549570,
chr21-41553049-41553487,
chr21-41554072-41554875,
chr21-41557945-41558223,
chr21-41559705-41561047,
chr21-41561344-41563820,
chr21-41564131-41565320,
chr21-41565654-41566740,
chr21-41567175-41568502,
chr21-41569012-41569286,
chr21-41574001-41574795,
chr21-41576049-41576419,
chr21-41580516-41586056,
chr21-41588945-41589916,
chr21-41590736-41590940,
chr21-41591543-41591866,
chr21-41592562-41593315,
chr21-41596184-41596598,
chr21-41597407-41599450,
chr21-41600668-41607029,
chr21-41607264-41617134,
chr21-41617741-41618159,
chr21-41619036-41619135,
chr21-41620001-41623327,
chr21-41698776-41700406,
chr21-41701336-41702512,
chr21-41703830-41708250,
chr21-41710305-41711418,
chr21-41711706-41713056,
chr21-41713475-41714677,
chr21-41715027-41718311,
chr21-41719102-41720033,
chr21-41720825-41721220,
chr21-41721582-41723534,
chr21-41724219-41724820,
chr21-41725384-41728963,
chr21-41729720-41730717,
chr21-41733728-41735705,
chr21-41736150-41737391,
chr21-41737818-41738231,
chr21-41740057-41742738,
chr21-41743343-41747580,
chr21-41748428-41748917,
chr21-41749162-41749630,
chr21-41750044-41752982,
chr21-41753429-41753815,
chr21-41754380-41755068,
chr21-41755301-41757502,
chr21-41758041-41771900,
chr21-41772125-41773546,
chr21-41774945-41781439,
chr21-41782169-41784881,
chr21-41785377-41785632,
chr21-41785969-41787549,
chr21-41793143-41793460,
chr21-41794325-41795136,
chr21-41796584-41797209,
chr21-41797596-41797844,
chr21-41798299-41798682,
chr21-41799784-41800050,
chr21-41800258-41800436,
chr21-41800941-41801669,
chr21-41801918-41803799,
chr21-41804360-41804854,
chr21-41805059-41805238,
chr21-41805853-41806997,
chr21-41807830-41808572,
chr21-41808928-41810866,
chr21-41811647-41812381,
chr21-41812630-41814016,
chr21-41814372-41823630,
chr21-41823944-41825655,
chr21-41827924-41829367,
chr21-41830742-41836906,
chr21-41837774-41838052,
chr21-41838738-41839946,
chr21-41842489-41843082,
chr21-41844161-41847949,
chr21-41849107-41849386,
chr21-41898621-41901470,
chr21-41903610-41904218,
chr21-41905344-41905910,
chr21-41907516-41908154,
chr21-41908433-41908738,
chr21-41912525-41913615,
chr21-41913829-41916045,
chr21-41916566-41919291,
chr21-41919607-41924881,
chr21-41950243-41951395,
chr21-41951919-41960803,
chr21-41961161-41962054,
chr21-41962297-41963236,
chr21-41964196-41969097,
chr21-41970716-41971987,
chr21-41972592-41976832,
chr21-42072432-42077357,
chr21-42077774-42087507,
chr21-42088172-42088785,
chr21-42089069-42090481,
chr21-42091730-42092368,
chr21-42092772-42095377,
chr21-42096641-42096982,
chr21-42097185-42102518,
chr21-42102731-42103045,
chr21-42103416-42126825,
chr21-42127155-42127810,
chr21-42128488-42129619,
chr21-42130648-42131154,
chr21-42133171-42133790,
chr21-42135118-42136218,
chr21-42136531-42136713,
chr21-42136966-42138370,
chr21-42139645-42142559,
chr21-42143139-42149312,
chr21-42149675-42151617,
chr21-42473712-42475050,
chr21-42475275-42477409,
chr21-42478322-42479169,
chr21-42480568-42481138,
chr21-42482081-42482692,
chr21-42485826-42486174,
chr21-42486445-42487207,
chr21-42488988-42489705,
chr21-42494711-42497356,
chr21-42499096-42500557,
chr21-42648967-42651377,
chr21-42651659-42660395,
chr21-42660643-42661368,
chr21-42661749-42667131,
chr21-42667757-42669990,
chr21-42670294-42674908,
chr21-42799515-42801184,
chr21-42801570-42802027,
chr21-42804198-42804619,
chr21-42806323-42807117,
chr21-42807469-42808220,
chr21-42809607-42810029,
chr21-42810534-42811625,
chr21-42812043-42812143,
chr21-42812479-42812787,
chr21-42815294-42815581,
chr21-42816699-42821466,
-
Co-expression with cohesin genes Rho = 0.3236
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.491
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.881
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,TAMR-MCF7,DU145,GM12892,K1,hTERT-HME1,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,MCF-7,HEK293T,GM12891,SARS-Cov2-olfactory,GM12878,MSiPS,Pancreas,K-562,A-549,HFFc6,PAEC,HeLa-S3,LNCaP,H1-Trophectoderm,SU-DHL-2,H9-hESC,NCI-H1437,Liver,ARPE-19,Germinal-Center-B,Hep-G2,HT-1197,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,NaiveB,SU-DHL-4,HUVEC,NPC-H9,RT-112,Skin-Fibroblast,Left-Ventricle,Jurkat,CC-2551,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:40875000-40900000~~chr21:41175000-41200000,
chr21:40900000-40925000~~chr21:41200000-41225000,
chr21:40925000-40950000~~chr21:41200000-41225000,
chr21:41075000-41100000~~chr21:41175000-41200000,
chr21:41121223-41122885~~chr21:41206719-41208416,
chr21:41121260-41122868~~chr21:41167149-41169803,
chr21:41150000-41175000~~chr21:41350000-41375000,
chr21:41150000-41175000~~chr21:41425000-41450000,
chr21:41150000-41175000~~chr21:41450000-41475000,
chr21:41150000-41175000~~chr21:41775000-41800000,
chr21:41167149-41169803~~chr21:41235512-41237477,
chr21:41167199-41169386~~chr21:41250553-41252905,
chr21:41169934-41171396~~chr21:41373764-41374984,
chr21:41175000-41200000~~chr21:41275000-41300000,
chr21:41175000-41200000~~chr21:41425000-41450000,
chr21:41175000-41200000~~chr21:41750000-41775000,
chr21:41175000-41200000~~chr21:41775000-41800000,
chr21:41200000-41225000~~chr21:41450000-41475000,
chr21:41200000-41225000~~chr21:41700000-41725000,
chr21:41200000-41225000~~chr21:41750000-41775000,
chr21:41200000-41225000~~chr21:41825000-41850000,
chr21:41200000-41225000~~chr21:41950000-41975000,
chr21:41200000-41225000~~chr21:42100000-42125000,
chr21:41200000-41225000~~chr21:42475000-42500000,
chr21:41200000-41225000~~chr21:42650000-42675000,
chr21:41275000-41300000~~chr21:41375000-41400000,
chr21:41275000-41300000~~chr21:41425000-41450000,
chr21:41275000-41300000~~chr21:41450000-41475000,
chr21:41275000-41300000~~chr21:41500000-41525000,
chr21:41275000-41300000~~chr21:41525000-41550000,
chr21:41275000-41300000~~chr21:41550000-41575000,
chr21:41275000-41300000~~chr21:41575000-41600000,
chr21:41275000-41300000~~chr21:41600000-41625000,
chr21:41275000-41300000~~chr21:41725000-41750000,
chr21:41275000-41300000~~chr21:41750000-41775000,
chr21:41275000-41300000~~chr21:41775000-41800000,
chr21:41275000-41300000~~chr21:41800000-41825000,
chr21:41275000-41300000~~chr21:41825000-41850000,
chr21:41275000-41300000~~chr21:41900000-41925000,
chr21:41275000-41300000~~chr21:42075000-42100000,
chr21:41275000-41300000~~chr21:42100000-42125000,
chr21:41275000-41300000~~chr21:42125000-42150000,
chr21:41275000-41300000~~chr21:42800000-42825000,
chr21:41281909-41284412~~chr21:41459991-41461684,
chr21:41281909-41284412~~chr21:41816016-41818176,
chr21:41282093-41284330~~chr21:41459685-41461551,
chr21:41282093-41284330~~chr21:41815923-41818297,
chr21:41282099-41284639~~chr21:41459664-41461786,
chr21:41282110-41284722~~chr21:41459434-41461559,
chr21:41282125-41284316~~chr21:41459620-41461739,
chr21:41282125-41284316~~chr21:41611455-41613750,
chr21:41282133-41284375~~chr21:41459735-41461936,
chr21:41282133-41284375~~chr21:41609804-41611416,
chr21:41282147-41284710~~chr21:41459580-41461716,
chr21:41282155-41284690~~chr21:41459307-41461849,
chr21:41282193-41284644~~chr21:41459685-41461836,
chr21:41282193-41284644~~chr21:41777403-41779683,
chr21:41282193-41284644~~chr21:41815835-41818294,
chr21:41282205-41284637~~chr21:41459476-41461719,
chr21:41282205-41284637~~chr21:41815737-41818351,
chr21:41282223-41284326~~chr21:41459674-41461814,
chr21:41282224-41284707~~chr21:41459487-41461757,
chr21:41282224-41284707~~chr21:41609800-41611357,
chr21:41282224-41284707~~chr21:41815737-41818316,
chr21:41282240-41284443~~chr21:41459800-41461731,
chr21:41282245-41284720~~chr21:41609880-41611334,
chr21:41282245-41284720~~chr21:41611373-41613994,
chr21:41282249-41284316~~chr21:41359432-41361272,
chr21:41282253-41284285~~chr21:41359487-41361156,
chr21:41282253-41284285~~chr21:41459934-41461665,
chr21:41282268-41284276~~chr21:41459775-41461692,
chr21:41282269-41284303~~chr21:41459918-41461732,
chr21:41282270-41284305~~chr21:41459683-41461603,
chr21:41282271-41284327~~chr21:41609719-41611366,
chr21:41282271-41284327~~chr21:41815837-41818350,
chr21:41282272-41284307~~chr21:41459825-41461718,
chr21:41282272-41284702~~chr21:41459656-41461660,
chr21:41282272-41284702~~chr21:41777480-41779175,
chr21:41282272-41284702~~chr21:41815747-41818270,
chr21:41282282-41284347~~chr21:41459502-41461722,
chr21:41282282-41284347~~chr21:41777107-41779197,
chr21:41282283-41284648~~chr21:41459867-41462122,
chr21:41282283-41284648~~chr21:41609888-41611281,
chr21:41282284-41284738~~chr21:41410569-41412490,
chr21:41282284-41284738~~chr21:41459709-41461697,
chr21:41282284-41284738~~chr21:41611517-41613753,
chr21:41282285-41284324~~chr21:41359525-41361220,
chr21:41282285-41284324~~chr21:41609938-41611367,
chr21:41282295-41284287~~chr21:41459726-41462162,
chr21:41282304-41284355~~chr21:41359414-41361284,
chr21:41282314-41285188~~chr21:41459631-41461654,
chr21:41282316-41284371~~chr21:41459776-41461623,
chr21:41282331-41284316~~chr21:41459997-41461595,
chr21:41282376-41284318~~chr21:41459958-41461683,
chr21:41282419-41284353~~chr21:41459674-41461670,
chr21:41282419-41284353~~chr21:41609817-41611331,
chr21:41282438-41284308~~chr21:41459812-41461705,
chr21:41282441-41284676~~chr21:41459795-41461716,
chr21:41282441-41284676~~chr21:41815802-41818289,
chr21:41282471-41284284~~chr21:41359635-41361174,
chr21:41282471-41284284~~chr21:41459737-41461655,
chr21:41282471-41284317~~chr21:41459729-41461718,
chr21:41282499-41284371~~chr21:41460072-41461492,
chr21:41282503-41284621~~chr21:41815822-41818125,
chr21:41282554-41284321~~chr21:41359636-41362143,
chr21:41282596-41284333~~chr21:41777823-41779000,
chr21:41282688-41284172~~chr21:41816062-41818083,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
GSE43070, 4DNFIDJ2JZ7Q, ENCSR794RDS, 4DNFIBN9K4V9, ENCSR361AYD, 4DNFIDSWKFF5, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, ENCSR113OIR, 4DNFIRKGMZRQ, GSE99541, ENCSR668RDP, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI9YAVTI1, ENCSR658RQQ, ENCSR299VMZ, 4DNFI6XD6JAQ, 4DNFISPUVQHA, GSE116872, ENCSR000FDB, ENCSR527RXH, GSE105028, ENCSR833CMG, 4DNFIBKZK63V, ENCSR033GUP, 4DNFIQWD8ZYD, GSE87112, 4DNFI3CFMRID, GSE94872, GSE118716, ENCSR499RVD, 4DNFIB7QTIMH, ENCSR146FPM, GSE155380, 4DNFICSTCJQZ, ENCSR587DSF, ENCSR452NHL, GSE80820, GSE52457, Direct, ENCSR314HAC, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, ENCSR778FXH, 4DNFI9ZWZ5BS, 4DNFIVJ3IIQL, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIS5F6EBL, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIR8OU6QJ, 4DNFIE8E4ANZ, GSE120294, GSE84022, ENCSR672RHL, 4DNFIW8TIFI5, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, 4DNFIM2BMJ33, 4DNFIX4PJKXZ, ENCSR386KHY, 4DNFIEJEFCAM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, ENCSR255XYX, 4DNFIE5TEYK7, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, GSE58752, 4DNFI8649RQJ, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, 4DNFI6EIFUZI, 4DNFII6AN691, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, 4DNFIOUSETUP, ENCSR752QCX, ENCSR128RPG, 4DNFIZF1KI43, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFIHN2QSMX, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: K-562,MCF-10A,HeLa-S3,P3HR-1
- Cohesin-DEGs, number of studies: 8
- Cohesin-DEGs, study: GSE139845,GSE140651,GSE101921,GSE154086,GSE131448,GSE130558
- Cohesin-DEGs, subunit: WAPL,SMC1,SA2