Deatailed information for gene ENSG00000182586
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00015270
- Gene Symbol: LINC00334
- Ensembl ID: ENSG00000182586
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Gene locus: chr21:45234307-45264547
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.3160
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.452
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: IMR-90,H1-Mesenchymal,MCF-7,HEK293T,GM12891,GM12878,K-562,A-549,HFFc6,HeLa-S3,SU-DHL-2,KU-19-19,H9-hESC,NCI-H1437,iPSC,Hep-G2,H1-hESC,MSLCL,HUVEC,HFF-hTERT
- Related loop:
chr21:27500000-27525000~~chr21:45225000-45250000,
chr21:44075000-44100000~~chr21:45250000-45275000,
chr21:44925000-44950000~~chr21:45250000-45275000,
chr21:44950000-44975000~~chr21:45250000-45275000,
chr21:45125000-45150000~~chr21:45225000-45250000,
chr21:45125000-45150000~~chr21:45250000-45275000,
chr21:45139693-45141316~~chr21:45269360-45271607,
chr21:45139699-45141285~~chr21:45235955-45237401,
chr21:45139731-45141427~~chr21:45236007-45237339,
chr21:45139732-45141221~~chr21:45269444-45271544,
chr21:45139756-45141227~~chr21:45256456-45257780,
chr21:45139773-45141251~~chr21:45235891-45237378,
chr21:45139825-45141312~~chr21:45235909-45237329,
chr21:45150000-45175000~~chr21:45250000-45275000,
chr21:45151104-45153330~~chr21:45269360-45271607,
chr21:45151535-45153313~~chr21:45235859-45237361,
chr21:45225000-45250000~~chr21:45325000-45350000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFIQYQWPF5, 4DNFI3CFMRID, GSE43070, GSE94872, 4DNFIDJ2JZ7Q, 4DNFIMROE6N4, ENCSR499RVD, 4DNFIB7QTIMH, 4DNFIBN9K4V9, GSE108787, GSE120294, 4DNFIILDWK8M, 4DNFIW8TIFI5, 4DNFIBM714BP, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR981FNA, 4DNFIV239W4L, 4DNFICEGAHRC, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, ENCSR128RPG, GSE52457, ENCSR299VMZ, Direct, 4DNFI6XD6JAQ, 4DNFI1UEG1HD, ENCSR244BBG, 4DNFIZF1KI43, GSE44267, 4DNFIPAF4PYT, 4DNFIC3HAU11, ENCSR404HWQ, 4DNFI5LCW273, 4DNFI2J1ODWB, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, 4DNFIFLJLIS5, ENCSR833CMG, GSE105028, 4DNFIH7TH4MF
- Cohesin-loop subunit: SMC1,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence: Kasumi-1
- Cohesin-DEGs, number of studies: 1
- Cohesin-DEGs, study: GSE47641
- Cohesin-DEGs, subunit: Rad21