Deatailed information for gene ENSG00000182871
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00015331
- Gene Symbol: COL18A1
- Ensembl ID: ENSG00000182871
-
Gene locus: chr21:45405164-45513720
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs,
- Regulatory cohesin (double-evidenced):
chr21-43899414-43901125,
chr21-43902347-43902875,
chr21-43903389-43904929,
chr21-43905740-43906024,
chr21-43906608-43910716,
chr21-43911097-43912991,
chr21-43913332-43914290,
chr21-43914602-43914828,
chr21-43915079-43915725,
chr21-43916632-43919024,
chr21-43919860-43926811,
chr21-44077348-44077570,
chr21-44078553-44078867,
chr21-44079138-44079687,
chr21-44081500-44084368,
chr21-44084897-44085581,
chr21-44086043-44086366,
chr21-44086762-44089972,
chr21-44090357-44091197,
chr21-44093882-44094111,
chr21-44094969-44096191,
chr21-44320741-44336654,
chr21-44337821-44343795,
chr21-44344069-44346159,
chr21-44347920-44356379,
chr21-44498019-44500523,
chr21-44501160-44501716,
chr21-44502563-44504881,
chr21-44505123-44507485,
chr21-44507767-44517880,
chr21-44518230-44523339,
chr21-44523567-44524569,
chr21-44524891-44530101,
chr21-44530680-44532516,
chr21-44532748-44534071,
chr21-44534275-44535130,
chr21-44536009-44536295,
chr21-44537821-44540876,
chr21-44547626-44548710,
chr21-44549598-44553104,
chr21-44799103-44805501,
chr21-44806825-44807985,
chr21-44808233-44808856,
chr21-44809850-44811758,
chr21-44812135-44814175,
chr21-44814747-44820942,
chr21-44823998-44825617,
chr21-44922496-44936465,
chr21-44937160-44937800,
chr21-44938036-44942579,
chr21-44943111-44946058,
chr21-44946260-44956117,
chr21-44956348-44960682,
chr21-44962017-44963405,
chr21-44964360-44974179,
chr21-44974593-45005352,
chr21-45124436-45132048,
chr21-45132786-45143934,
chr21-45145219-45145603,
chr21-45145953-45146151,
chr21-45147401-45149408,
chr21-45150033-45150257,
chr21-45150601-45151290,
chr21-45151534-45152963,
chr21-45153404-45154346,
chr21-45154600-45155466,
chr21-45155889-45157161,
chr21-45157471-45158352,
chr21-45159622-45160462,
chr21-45161033-45162644,
chr21-45163388-45165275,
chr21-45167498-45168102,
chr21-45168865-45169440,
chr21-45169768-45170044,
chr21-45171104-45171438,
chr21-45172537-45173124,
chr21-45174479-45174770,
chr21-45199827-45201411,
chr21-45201822-45203368,
chr21-45205334-45205638,
chr21-45206724-45207526,
chr21-45208102-45208832,
chr21-45209175-45210299,
chr21-45210540-45211407,
chr21-45211669-45211971,
chr21-45212249-45212719,
chr21-45218184-45218795,
chr21-45220299-45221191,
chr21-45221574-45224852,
chr21-45276631-45278067,
chr21-45278276-45280924,
chr21-45281215-45285084,
chr21-45285295-45286241,
chr21-45286477-45297005,
chr21-45297393-45298845,
chr21-45299162-45312040,
chr21-45312982-45313691,
chr21-45316533-45338135,
chr21-45339035-45339421,
chr21-45340328-45340876,
chr21-45341176-45342108,
chr21-45342847-45354233,
chr21-45354913-45370068,
chr21-45377752-45389221,
chr21-45400803-45401401,
chr21-45401908-45445613,
chr21-45447735-45461753,
chr21-45463590-45484721,
chr21-45485639-45487680,
chr21-45487915-45502397,
chr21-45502617-45502900,
chr21-45503606-45519118,
chr21-45526587-45546954,
chr21-45589437-45600222,
chr21-45799954-45801669,
chr21-45801901-45802870,
chr21-45803374-45804235,
chr21-45804566-45806380,
chr21-45809423-45809839,
chr21-45810206-45810279,
chr21-45811128-45811479,
chr21-45812475-45812693,
chr21-45813685-45816501,
chr21-45816934-45824027,
chr21-45824560-45825827,
chr21-45826840-45830627,
chr21-45830839-45831391,
chr21-45831779-45832772,
chr21-45833478-45836709,
chr21-45837172-45837882,
chr21-45844115-45844699,
chr21-45845305-45846222,
chr21-45846697-45847005,
chr21-45847320-45849116,
chr21-45852342-45852716,
chr21-45852961-45853362,
chr21-45853877-45854268,
chr21-45854878-45855880,
chr21-45856638-45858073,
chr21-45859098-45862050,
chr21-45862690-45866808,
chr21-45867090-45872210,
chr21-45872497-45872737,
chr21-45873424-45874184,
chr21-45874401-45877128,
chr21-45877568-45881967,
chr21-45921404-45925225,
chr21-45926057-45926739,
chr21-45927271-45927330,
chr21-45927607-45933291,
chr21-45933700-45935405,
chr21-45935980-45936491,
chr21-45937087-45942541,
chr21-45942760-45946249,
chr21-45947046-45949181,
chr21-45949436-45952197,
chr21-46094789-46101183,
chr21-46101525-46102239,
chr21-46107500-46107764,
chr21-46108827-46114343,
chr21-46114890-46141044,
-
Co-expression with cohesin genes Rho = 0.2997
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.562
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.825
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,Keratinocytes192627,GM12892,K1,hTERT-HME1,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,GM19239,HEK293T,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,LNCaP,H1-Trophectoderm,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,iPSC,REC-1,ARPE-19,HCT-116,OCI-AML-3,Hep-G2,HT-1197,Kelly,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,SU-DHL-4,CyT49-hESC,HUVEC,HL-60,NPC-H9,RT-112,Skin-Fibroblast,KBM-7,Jurkat,CC-2551,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:43350000-43375000~~chr21:45450000-45475000,
chr21:43900000-43925000~~chr21:45400000-45425000,
chr21:44075000-44100000~~chr21:45450000-45475000,
chr21:44325000-44350000~~chr21:45500000-45525000,
chr21:44500000-44525000~~chr21:45450000-45475000,
chr21:44525000-44550000~~chr21:45425000-45450000,
chr21:44800000-44825000~~chr21:45450000-45475000,
chr21:44925000-44950000~~chr21:45425000-45450000,
chr21:44925000-44950000~~chr21:45450000-45475000,
chr21:44950000-44975000~~chr21:45425000-45450000,
chr21:44950000-44975000~~chr21:45450000-45475000,
chr21:44975000-45000000~~chr21:45425000-45450000,
chr21:44975000-45000000~~chr21:45450000-45475000,
chr21:44975000-45000000~~chr21:45500000-45525000,
chr21:45125000-45150000~~chr21:45425000-45450000,
chr21:45125000-45150000~~chr21:45450000-45475000,
chr21:45125000-45150000~~chr21:45500000-45525000,
chr21:45136439-45139361~~chr21:45438127-45440654,
chr21:45139534-45141238~~chr21:45438384-45440554,
chr21:45139554-45141260~~chr21:45438127-45440654,
chr21:45139555-45141248~~chr21:45438460-45440575,
chr21:45139579-45141230~~chr21:45438202-45440761,
chr21:45139601-45141264~~chr21:45438059-45440543,
chr21:45139623-45141236~~chr21:45438345-45440658,
chr21:45139624-45141292~~chr21:45438383-45440733,
chr21:45139629-45141295~~chr21:45438049-45440695,
chr21:45139650-45141317~~chr21:45438318-45440592,
chr21:45139658-45141304~~chr21:45438366-45440780,
chr21:45139673-45141222~~chr21:45438105-45440682,
chr21:45139688-45141261~~chr21:45438098-45440775,
chr21:45139694-45141242~~chr21:45438439-45440623,
chr21:45139699-45141285~~chr21:45438142-45440624,
chr21:45139700-45141225~~chr21:45438474-45440647,
chr21:45139703-45141220~~chr21:45438433-45440517,
chr21:45139731-45141427~~chr21:45438417-45440836,
chr21:45139734-45141308~~chr21:45438099-45440648,
chr21:45139737-45141278~~chr21:45438575-45440579,
chr21:45139742-45141196~~chr21:45438737-45440429,
chr21:45139752-45141201~~chr21:45438594-45440402,
chr21:45139756-45141227~~chr21:45427127-45428797,
chr21:45139756-45141227~~chr21:45438129-45440499,
chr21:45139756-45141227~~chr21:45477292-45479145,
chr21:45139772-45141201~~chr21:45438414-45440537,
chr21:45139773-45141251~~chr21:45438069-45440905,
chr21:45139825-45141312~~chr21:45438277-45440446,
chr21:45139844-45141294~~chr21:45438469-45440424,
chr21:45139849-45141273~~chr21:45438598-45440391,
chr21:45139858-45141276~~chr21:45438511-45440385,
chr21:45139859-45141236~~chr21:45438572-45440279,
chr21:45139873-45141121~~chr21:45438877-45440262,
chr21:45139887-45141209~~chr21:45438578-45440270,
chr21:45150000-45175000~~chr21:45425000-45450000,
chr21:45150000-45175000~~chr21:45450000-45475000,
chr21:45151182-45153539~~chr21:45438127-45440654,
chr21:45151234-45153330~~chr21:45438098-45440775,
chr21:45151445-45153499~~chr21:45438460-45440575,
chr21:45151610-45153626~~chr21:45438417-45440836,
chr21:45151747-45153264~~chr21:45438277-45440446,
chr21:45200000-45225000~~chr21:45450000-45475000,
chr21:45275000-45300000~~chr21:45425000-45450000,
chr21:45275000-45300000~~chr21:45450000-45475000,
chr21:45291323-45293772~~chr21:45438105-45440722,
chr21:45291474-45293716~~chr21:45438468-45440893,
chr21:45291491-45294096~~chr21:45438220-45440789,
chr21:45291500-45293994~~chr21:45438098-45440775,
chr21:45291501-45293824~~chr21:45438412-45440648,
chr21:45291507-45293745~~chr21:45438455-45440695,
chr21:45291507-45293986~~chr21:45438105-45440682,
chr21:45291547-45293953~~chr21:45438417-45440836,
chr21:45291549-45293876~~chr21:45438384-45440554,
chr21:45291558-45293653~~chr21:45438389-45440412,
chr21:45291564-45293921~~chr21:45438366-45440780,
chr21:45291571-45293755~~chr21:45438142-45440624,
chr21:45291571-45294131~~chr21:45438069-45440905,
chr21:45291583-45293732~~chr21:45438575-45440579,
chr21:45291592-45293929~~chr21:45438202-45440761,
chr21:45291594-45293799~~chr21:45438457-45440874,
chr21:45291597-45293802~~chr21:45438059-45440543,
chr21:45291598-45293774~~chr21:45438356-45440737,
chr21:45291600-45293767~~chr21:45438318-45440592,
chr21:45291603-45293884~~chr21:45438441-45440492,
chr21:45291605-45293720~~chr21:45438411-45440683,
chr21:45291607-45293925~~chr21:45438383-45440733,
chr21:45291619-45293884~~chr21:45438345-45440658,
chr21:45291623-45294042~~chr21:45438381-45440438,
chr21:45291628-45293673~~chr21:45438557-45440573,
chr21:45291650-45293537~~chr21:45438627-45440426,
chr21:45291652-45295569~~chr21:45438099-45440648,
chr21:45291660-45293601~~chr21:45438433-45440517,
chr21:45291678-45293713~~chr21:45438129-45440499,
chr21:45291692-45293742~~chr21:45438474-45440647,
chr21:45291699-45293755~~chr21:45438127-45440654,
chr21:45291702-45294027~~chr21:45438277-45440446,
chr21:45291718-45293633~~chr21:45438479-45440419,
chr21:45291806-45293737~~chr21:45438460-45440575,
chr21:45291818-45293858~~chr21:45438511-45440385,
chr21:45291823-45294686~~chr21:45438049-45440695,
chr21:45291830-45293531~~chr21:45438737-45440429,
chr21:45291838-45294439~~chr21:45438069-45440692,
chr21:45291845-45293744~~chr21:45438439-45440623,
chr21:45291876-45293661~~chr21:45438456-45440373,
chr21:45291883-45293599~~chr21:45438463-45440437,
chr21:45291893-45293747~~chr21:45438572-45440279,
chr21:45291897-45293741~~chr21:45438535-45440612,
chr21:45291900-45293744~~chr21:45438474-45440451,
chr21:45291920-45293888~~chr21:45438261-45440427,
chr21:45291923-45293716~~chr21:45438598-45440391,
chr21:45291941-45293676~~chr21:45438578-45440270,
chr21:45291944-45293872~~chr21:45438469-45440424,
chr21:45291945-45293660~~chr21:45438594-45440402,
chr21:45291990-45293339~~chr21:45438877-45440262,
chr21:45293942-45295657~~chr21:45403665-45407376,
chr21:45293942-45295657~~chr21:45438129-45440499,
chr21:45300000-45325000~~chr21:45400000-45425000,
chr21:45300000-45325000~~chr21:45425000-45450000,
chr21:45300000-45325000~~chr21:45450000-45475000,
chr21:45319126-45320305~~chr21:45438389-45440412,
chr21:45321904-45323298~~chr21:45438439-45440623,
chr21:45325000-45350000~~chr21:45425000-45450000,
chr21:45325000-45350000~~chr21:45450000-45475000,
chr21:45325000-45350000~~chr21:45500000-45525000,
chr21:45358958-45360981~~chr21:45410524-45412432,
chr21:45358960-45361003~~chr21:45438098-45440775,
chr21:45385942-45387941~~chr21:45438389-45440412,
chr21:45425000-45450000~~chr21:45800000-45825000,
chr21:45425000-45450000~~chr21:45825000-45850000,
chr21:45438105-45440682~~chr21:45818484-45821583,
chr21:45438142-45440624~~chr21:45818578-45821611,
chr21:45438417-45440836~~chr21:45818438-45821813,
chr21:45443201-45445892~~chr21:45817782-45819362,
chr21:45443201-45445892~~chr21:45819577-45821553,
chr21:45443263-45444867~~chr21:45819855-45821550,
chr21:45443298-45445960~~chr21:45595973-45597848,
chr21:45443298-45445960~~chr21:45819441-45821575,
chr21:45443306-45446030~~chr21:45819676-45821573,
chr21:45443329-45444663~~chr21:45819512-45821569,
chr21:45443387-45444597~~chr21:45595921-45597751,
chr21:45443393-45444628~~chr21:45818578-45821611,
chr21:45450000-45475000~~chr21:45800000-45825000,
chr21:45450000-45475000~~chr21:45825000-45850000,
chr21:45450000-45475000~~chr21:45850000-45875000,
chr21:45450000-45475000~~chr21:45925000-45950000,
chr21:45454724-45456346~~chr21:45477533-45479175,
chr21:45477101-45479170~~chr21:45819453-45821601,
chr21:45477101-45479170~~chr21:45879575-45881506,
chr21:45477119-45480039~~chr21:45818200-45821818,
chr21:45477292-45479145~~chr21:45595881-45597823,
chr21:45477292-45479145~~chr21:45819438-45821567,
chr21:45477348-45479204~~chr21:45595879-45597829,
chr21:45477348-45479204~~chr21:45818578-45821611,
chr21:45477360-45479274~~chr21:45818438-45821813,
chr21:45477385-45479624~~chr21:45595863-45597829,
chr21:45477385-45479624~~chr21:45819513-45821757,
chr21:45477518-45479023~~chr21:45819894-45821572,
chr21:45477532-45479123~~chr21:45819958-45821534,
chr21:45477564-45479060~~chr21:45595980-45597669,
chr21:45477626-45479192~~chr21:45819992-45821424,
chr21:45500000-45525000~~chr21:46100000-46125000,
chr21:45514977-45516574~~chr21:45540779-45543029,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, GSE43070, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, ENCSR794RDS, 4DNFIBN9K4V9, ENCSR852KQC, ENCSR361AYD, 4DNFIDSWKFF5, GSE103148, 4DNFI7H4II2V, 4DNFIZ4F74QR, ENCSR350NJV, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, ENCSR113OIR, 4DNFIKYXMF1E, ENCSR668RDP, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFIJ5DQZVK, ENCSR658RQQ, ENCSR299VMZ, 4DNFI6XD6JAQ, 4DNFISPUVQHA, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, ENCSR000FDB, 4DNFI7XAZNNQ, ENCSR527RXH, GSE105028, ENCSR833CMG, 4DNFIBKZK63V, ENCSR033GUP, 4DNFIQWD8ZYD, 4DNFI3CFMRID, ENCSR662QKG, GSE118716, ENCSR499RVD, 4DNFIB7QTIMH, GSE126792, ENCSR146FPM, 4DNFIOX3BGNE, GSE155380, 4DNFIJWBWE41, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, GSE52457, 4DNFIBT4EAKN, 4DNFIYWONU7A, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIWZEN3FF, 4DNFIR8OU6QJ, 4DNFI6CWNUFL, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, 4DNFIPV5KFMK, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIXU2KPNQ, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIFHU75I5, 4DNFIYD8LO9Z, ENCSR444BAR, ENCSR123UVP, 4DNFIL9M97T2, 4DNFI3A3VYWU, 4DNFIM2BMJ33, 4DNFIALNLR78, 4DNFIBY3UHJB, ENCSR386KHY, 4DNFIEJEFCAM, 4DNFIQRTP7NM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, ENCSR255XYX, ENCSR404HWQ, 4DNFIE5TEYK7, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, GSE116869, 4DNFI8649RQJ, 4DNFIRZA6EV6, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIP25GZGA, 4DNFI6EIFUZI, 4DNFIBCIA62Q, GSE111537, GSE131580, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, 4DNFIOUSETUP, ENCSR752QCX, ENCSR128RPG, 4DNFISTWNV9C, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI5LCW273, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
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Involved cell types for DEG evidence: HCT116-mAID,HPC,SLK,P3HR-1,K-562,MCF-10A
- Cohesin-DEGs, number of studies: 8
- Cohesin-DEGs, study: GSE140651,GSE119828,GSE154086,GSE131448,GSE138937,GSE106886
- Cohesin-DEGs, subunit: SA2,CTCF,SMC1,Rad21,CdLS